New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5965514 =	48 (1.060)	3 (0.070)	3/234	NT	6.2%	coding (652/696 nt)	had	(S)‑2‑haloacid dehalogenase
	?	NC_002947	5965558 =	45 (1.060)					coding (696/696 nt)	had	(S)‑2‑haloacid dehalogenase

GCCCTATCTGAGTGGCTGATCGCAAAAAAGCCCGCCGTCGCTGCGGGCTTTTTTATGCCTGTGGGTTTTGTGTTGCCCGTGCCCGCGAATGGGCCGCAAAGCGGCTCCCGTCAGCGCCAGCGCGCGAGCACGTCGGGCAGCTGCGACAGGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5965668‑5965514 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgctgACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGCTTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGG  >  NC_002947/5965558‑5965702                                                                                                                                                                                                                                                                                                              GCCATATCTGAGTGGCTGATCGCAAAAAAGCCCGCCGTCGCTGCGGGCTTTTTTATGCCTGTGGGTTTTGTGTTGCCCGGGCCCGCGAATGGGCCGCAAAGCGGCTCCCGTCAGCGCCAGCGCGCGAGCACGTCGGGCAGCTGCGACAGG                                                                                                                                                        <  1:219183/150‑1  CCCTATCTGAGTGGCTGATCGCAAAAAAGCCCGCCGTCGCTGCGGGCTTTTTTATGCCTGTGGGTTTTGTGTTGCCCGTGCCCGCGAATGGGCCGCAAAGCGGCTCCCGTCAGCGCCAGCGCGCGAGCACGTCGGGCAGCTGCGACAGGC                                                                                                                                                       >  2:322812/1‑150    CTATCTGAGTGGCTGATCGCAAAAAAGCATGCCGTCGCTGCGGGCTTTTTTATGCCTGTGGGTTTTGTGTTGCCCGTGCCCGCGAATGGGCCGCAAAGCGGCTCCCGTCAGCGCCAGCGCGCGAGCACGTCGGGCAGCTGCGACAGGCGC                                                                                                                                                     >  1:336759/1‑150                                                                                                             CGTCAGCGCCAGCGCGCGAGCACGTCGGGCAGCTGCGACAGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGCTTTTTTGCGATC                                                     <  1:621625/141‑1                                                                                                             CGTCAGCGCCAGCGCGCGAGCACGTCGGGCAGCTGCGACAGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGCTTTTTTGCGATC                                                     >  2:621625/1‑141                                                                                                               TCAGCGCCAGCGCGCGAGCACGTCGGGCAGCTGCGACAGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGCTTTTTTGCGATCAGCCACTCAca                                          >  1:843216/1‑148                                                                                                                                                       CGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGCTTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGG  <  1:230192/150‑1                                                                                                                                                       CGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGCTTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGG  <  2:454853/150‑1                                                                                                                                                                                                                                                                                                              GCCCTATCTGAGTGGCTGATCGCAAAAAAGCCCGCCGTCGCTGCGGGCTTTTTTATGCCTGTGGGTTTTGTGTTGCCCGTGCCCGCGAATGGGCCGCAAAGCGGCTCCCGTCAGCGCCAGCGCGCGAGCACGTCGGGCAGCTGCGACAGGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5965668‑5965514 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgctgACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGCTTTTTTGCGATCAGCCACTCAGATAGGGCGGCTGCCGTACTTGTTGTCTGGCTTCTTGGGCGG  >  NC_002947/5965558‑5965702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.