New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5965514 =	48 (1.060)	3 (0.070)	3/234	NT	6.2%	coding (652/696 nt)	had	(S)‑2‑haloacid dehalogenase
	?	NC_002947	5965558 =	45 (1.060)					coding (696/696 nt)	had	(S)‑2‑haloacid dehalogenase

CGAGGTGGACGCGGGTGCGGCGGTGCACATCGGCGATCACCCTGGCGATGACATTGCCGGTGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGCTTTTTTGCGATCAGCCA  >  NC_002947/5965369‑5965656                                                                                                                                                  |                                                                                                                                               ccgcccaagaagccagacaacaagtacggcagccgccctatctgagtggctgatcgcaaaaaagcccgccgtcgctgcgggcttttttatgcctgtgggttttgtgttgcccgtgcccgcgaatgggccgcaaagcggctcccgtCAgcg                                                                                                                                            <  2:454853‑M1/5‑1 (MQ=255) ccgcccaagaagccagacaacaagtacggcagccgccctatctgagtggctgatcgcaaaaaagcccgccgtcgctgcgggcttttttatgcctgtgggttttgtgttgcccgtgcccgcgaatgggccgcaaagcggctcccgtCAgcg                                                                                                                                            <  1:230192‑M1/5‑1 (MQ=255)        gACGCGGGTGCGGCGGTGCACATCGGCGATCACCCTGGCGATGACATTGCCGGTGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCg                                                                                                                                     >  1:480677/1‑150 (MQ=255)        gACGCGGGTGCGGCGGTGCACATCGGCGATCACCCTGGCGATGACATTGCCGGTGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCg                                                                                                                                     >  1:264138/1‑150 (MQ=255)                   ggcggTGCACATCGGCGATCACCCTGGCGATGACATTGCCGGTGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGa                                                                                                                          <  2:480677/150‑1 (MQ=255)                            caTCGGCGATCACCCTGGCGATGACATTGCCGGTGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTcgc                                                                                                                 >  2:1191966/1‑150 (MQ=255)                                ggCGATCACCCTGGCGATGACATTGCCGGTGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCgcgcgc                                                                                                             <  1:696753/150‑1 (MQ=255)                                         tgtgagtggctgatcgcaaaaaagcccgccgtcgctgcgggcttttttatgcctgtgggttttgtgttgcccgtgcccgcgaatgggccgcaaagcggctcccgtCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGa                                                                                                    >  1:843216‑M1/106‑150 (MQ=255)                                         ccTGGCGATGACATTGCCGGTGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGa                                                                                                    >  2:139546/1‑150 (MQ=255)                                               gATGACATTGCCGGTGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAg                                                                                              >  1:322812/1‑150 (MQ=255)                                                    gatcgcaaaaaagcccgccgtcgctgcgggcttttttatgcctgtgggttttgtgttgcccgtgcccgcgaatgggccgcaaagcggctcccgtCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACg                                                                                                  >  2:621625‑M1/95‑141 (MQ=255)                                                    gatcgcaaaaaagcccgccgtcgctgcgggcttttttatgcctgtgggttttgtgttgcccgtgcccgcgaatgggccgcaaagcggctcccgtCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACg                                                                                                  <  1:621625‑M1/47‑1 (MQ=255)                                                         ccGGTGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCg                                                                                    <  1:1191966/150‑1 (MQ=255)                                                          cGGTGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCgg                                                                                   >  2:329585/1‑150 (MQ=255)                                                          cGGTGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCgg                                                                                   <  1:519766/150‑1 (MQ=255)                                                             tGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCgg                                                                                   <  2:753134/147‑1 (MQ=255)                                                             tGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCgg                                                                                   >  1:753134/1‑147 (MQ=255)                                                                 cAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGcc                                                                                                                             <  2:587389/101‑1 (MQ=255)                                                                 cAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGcc                                                                                                                             >  1:587389/1‑101 (MQ=255)                                                                 cAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCttt                                                                                       >  2:95356/1‑139 (MQ=255)                                                                 cAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCttt                                                                                       <  1:95356/139‑1 (MQ=255)                                                                 cAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTc                                                                            <  2:465144/150‑1 (MQ=255)                                                                 cAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTc                                                                            <  2:465123/150‑1 (MQ=255)                                                                      cgcCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGcggg                                                                       <  1:623569/150‑1 (MQ=255)                                                                       gcCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAg                                                                                              >  1:662124/1‑126 (MQ=255)                                                                       gcCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAg                                                                                              <  2:662124/126‑1 (MQ=255)                                                                           gTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGcgggcacgg                                                                  >  2:804626/1‑150 (MQ=255)                                                                                cgcgcgGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAac                                                             <  2:931696/150‑1 (MQ=255)                                                                                 gcgcgGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAaca                                                            >  2:1009617/1‑150 (MQ=255)                                                                                     ggTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACgg                                                                                                 <  2:468667/109‑1 (MQ=255)                                                                                     ggTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACgg                                                                                                 >  1:468667/1‑109 (MQ=255)                                                                                           gTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCcac                                                  <  1:651800/150‑1 (MQ=255)                                                                                            ttCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACaaaa                                                       >  1:972574/1‑144 (MQ=255)                                                                                            ttCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACaaaa                                                       <  2:972574/144‑1 (MQ=255)                                                                                             tCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAg                                                <  1:1009617/150‑1 (MQ=255)                                                                                               aaCCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGc                                              >  1:454853/1‑150 (MQ=255)                                                                                                aCCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGcgggcacggg                                                                 <  1:1197148/130‑1 (MQ=255)                                                                                                aCCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGcgggcacggg                                                                 >  2:1197148/1‑130 (MQ=255)                                                                                                aCCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCa                                             >  1:697873/1‑150 (MQ=255)                                                                                                  ccGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGcgggcacg                                                                   >  2:70668/1‑126 (MQ=255)                                                                                                  ccGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGcgggcacg                                                                   <  1:70668/126‑1 (MQ=255)                                                                                                  ccGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATa                                           >  1:1171516/1‑150 (MQ=255)                                                                                                  ccGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATa                                           >  2:1180654/1‑150 (MQ=255)                                                                                                    gCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGTCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGa                                                                                               >  2:755784/1‑96 (MQ=255)                                                                                                    gCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGTCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGa                                                                                               <  1:755784/96‑1 (MQ=255)                                                                                                              gCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTCGCGGCGCCTGCGCGGGCACGGGCAACACAGAACCCACAAGCATAAAAAAGCCCGCa                               >  2:336759/1‑150 (MQ=255)                                                                                                               ccTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAg                              >  2:310207/1‑150 (MQ=255)                                                                                                                          gATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGTTCGGTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGc                   <  2:766430/150‑1 (MQ=255)                                                                                                                              aGGCGCCGGATGCCGAAATCCAGCGCCTGTGGCAGCTGCCCGACGTGCGCGCGCGCTGCCGCGGACGGGAGCCCCTTTGCGGCGCAGTCGCGGGCACGGGCAACACAAAACCCTCAGGCATAAAAAAGCCCGCAGCGACGGAGGGCtttt               <  2:292024/150‑1 (MQ=255)                                                                                                                                gcgcCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGCtttttt             >  2:230192/1‑150 (MQ=255)                                                                                                                                          ccGAAATCCAGCGCCTGTCGCAGCGGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGCTTTTTTGCGATCAGcc   <  1:139546/150‑1 (MQ=255)                                                                                                                                           cGAAATCCGGCGCCTGTCGCAGCTGCCCGACGTGCACGCGCGCTGGGGCTAACGGGAGCCGCTTTGCGGCCCCTTCGCGGGCACGGGCAACACAAAACACACAGGCGTAAAAACGCCCGCAGCGCCGGCGGCCTTGTTTGCGCTCAGCCa  >  2:328883/1‑150 (MQ=255)                                                                                                                                           cGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGCTTTTTTGCGATCAGCCa  >  2:1119408/1‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                               CGAGGTGGACGCGGGTGCGGCGGTGCACATCGGCGATCACCCTGGCGATGACATTGCCGGTGCCCAGCGCGCCGGTTTGCGCGCGGTGTGGTTCAACCCGCAGGGCAAGGCCTGGACTGGCGATCAGGCGCCGGATGCCGAAATCCAGCGCCTGTCGCAGCTGCCCGACGTGCTCGCGCGCTGGCGCTGACGGGAGCCGCTTTGCGGCCCATTCGCGGGCACGGGCAACACAAAACCCACAGGCATAAAAAAGCCCGCAGCGACGGCGGGCTTTTTTGCGATCAGCCA  >  NC_002947/5965369‑5965656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.