New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	73699 =	47 (1.040)	4 (0.090)	4/244	NT	8.0%	coding (175/888 nt)	PP_0063	lipid A biosynthesis lauroyl acyltransferase
	?	NC_002947	73721 =	46 (1.040)					coding (197/888 nt)	PP_0063	lipid A biosynthesis lauroyl acyltransferase

TGGTCGGGGTGCTGCGCCTGTTTGCCAAGCTGCCCTGGGGCGCTGTGCAGCGTGTCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTGCTGGAGCAGG  >  NC_002947/73550‑73843                                                                                                                                                      |                                                                                                                                                 gaccacgcctttacccgaggccagggcctgctccagcacttccaggccatgcacttccttgaccagctccagcgagcgttgcggcggccagattcagtcacaggcactttcgacaaaggatttaccgatatcccgcagcgcctggcccac                                                                                                                                                  >  1:1052911‑M1/150‑150 (MQ=255)    tCGGGGTGCTGCGCCTGTTTGCCAAGCTGCCCTGGGGCGCTGTGCAGCGTGTCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCgg                                                                                                                                               <  1:916037/150‑1 (MQ=255)             tgcGCCTGTTTGCCAAGCTGCCCTGGGGCGCTGTGCAGCGCGTCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGAGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTg                                                                                                                                      >  1:1153347/1‑150 (MQ=255)               cgcCTGTTTGCCAAGCTGCCCTGGGGCGCTGTGCAGCGTGTCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAg                                                                                                                                    >  1:1176360/1‑150 (MQ=255)                     tttGCCAAGCTGCCCTGGGGCGCTGTGCAGCGTGTCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAAAAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACtg                                                                                                                              >  2:401709/1‑150 (MQ=255)                         ccAAGCTGCCCTGGGGTGCTGTGCAGCGGGTCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACtggtgg                                                                                                                          <  2:191409/150‑1 (MQ=255)                         ccAAGCTGCCCTGGGGCGCTGTGCAGCGTGTCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACtggtgg                                                                                                                          >  2:54333/1‑150 (MQ=255)                            aGCTGCCCTGGGGCGCTGTGCAGCGTGTCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGcc                                                                                                                       <  1:54333/150‑1 (MQ=255)                              cTGCCCTGGGGCGCTGTGCAGCGTGTCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAg                                                                                                                     <  2:1144002/150‑1 (MQ=255)                                                  gCGTGTCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTaa                                                                                                 <  2:940170/150‑1 (MQ=255)                                                    gtgtCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACtggtgg                                                                                                                          >  1:1126868/1‑123 (MQ=255)                                                    gtgtCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACtggtgg                                                                                                                          <  2:1126868/123‑1 (MQ=255)                                                       tCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGATGCGGGATATCGGTAAATCCt                                                                                            <  1:401709/150‑1 (MQ=255)                                                          gCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATc                                                                                                      <  2:291072/137‑1 (MQ=255)                                                          gCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATc                                                                                                      >  1:291072/1‑137 (MQ=255)                                                            aCCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAg                                                                                                                     <  1:728356/120‑1 (MQ=255)                                                            aCCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAg                                                                                                                     >  2:728356/1‑120 (MQ=255)                                                                      gctggctgATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAgtgcct                                                                             <  2:377296/150‑1 (MQ=255)                                                                                gtgGACGATCCCCACCGGTGCGCGCAACGTGGTACGGATCAAGCTGGCCAAATGCTTCCGGGAGACGGACCCGGTTGCCCGGGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGAt                                                                   <  2:528015/150‑1 (MQ=255)                                                                                       aTCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGgccg                                                            >  2:474967/1‑150 (MQ=255)                                                                                          cccAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGccgccg                                                         >  1:349693/1‑150 (MQ=255)                                                                                           ccAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAgt                                                                                 >  2:1016561/1‑125 (MQ=255)                                                                                           ccAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAgt                                                                                 <  1:1016561/125‑1 (MQ=255)                                                                                           ccAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCcgccgc                                                        >  2:506208/1‑150 (MQ=255)                                                                                            cAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTgg                                                               <  2:256540/142‑1 (MQ=255)                                                                                            cAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTgg                                                               >  1:256540/1‑142 (MQ=255)                                                                                             aaCAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCaa                                                      <  1:473555/150‑1 (MQ=255)                                                                                             aaCAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTAGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCaa                                                      >  1:1035350/1‑150 (MQ=255)                                                                                                     gcgcAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAAcgctcgct                                              <  1:782851/150‑1 (MQ=255)                                                                                                      cgcAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTg                                             <  1:474967/150‑1 (MQ=255)                                                                                                         aaCGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAg                                          <  2:1135110/150‑1 (MQ=255)                                                                                                         aaCGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAg                                          >  1:201470/1‑150 (MQ=255)                                                                                                           cGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCt                                        >  1:1020142/1‑150 (MQ=255)                                                                                                                tACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAg                                                                                                                     >  1:358297/1‑68 (MQ=255)                                                                                                                tACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAg                                                                                                                     <  2:358297/68‑1 (MQ=255)                                                                                                                   ggATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGcc                                                                                                                       >  1:852337/1‑63 (MQ=255)                                                                                                                   ggATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGcc                                                                                                                       <  2:852337/63‑1 (MQ=255)                                                                                                                   aaaggatttaccgatatcccgcagcgcctggcccaCCAGTTGCTCACGGGCAACCGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTc                                                                                       >  1:750681‑M1/36‑95 (MQ=255)                                                                                                                   aaaggatttaccgatatcccgcagcgcctggcccaCCAGTTGCTCACGGGCAACCGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTc                                                                                       <  2:750681‑M1/60‑1 (MQ=255)                                                                                                                    aaggatttaccgatatcccgcagcgcctggcccaCCGGTTGCCCGTGAGCAACtggtgg                                                                                                                          <  2:118270‑M1/25‑1 (MQ=255)                                                                                                                    aaggatttaccgatatcccgcagcgcctggcccaCCGGTTGCCCGTGAGCAACtggtgg                                                                                                                          >  1:118270‑M1/35‑59 (MQ=255)                                                                                                                     aTCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTTCCCGTGAGCAACTGGTGGGCCAGTCGTTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGTCGCAACGCTCGCTGGATCTGGTCAAGGaa                              <  2:344310/150‑1 (MQ=255)                                                                                                                      tCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAg                             >  1:1074541/1‑150 (MQ=255)                                                                                                                         aCCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGc                          >  1:1177597/1‑150 (MQ=255)                                                                                                                           cTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCAt                        >  1:609931/1‑150 (MQ=255)                                                                                                                             ggCCAAATGCTGCCCGGAGATGGACCCGGTTGCCTGTGGGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTACATCTTCTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATgg                      <  2:232028/150‑1 (MQ=255)                                                                                                                                 gaaTGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAgtgcctgtgcct                                                                       >  2:825251/2‑97 (MQ=255)                                                                                                                                 aaaTGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAgtgcctgtgcct                                                                       <  1:825251/97‑1 (MQ=255)                                                                                                                                       ttCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTg            >  1:964350/1‑150 (MQ=255)                                                                                                                                         cccGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTGCt          <  2:201470/150‑1 (MQ=255)                                                                                                                                           cGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTc                                    <  2:882103/122‑1 (MQ=255)                                                                                                                                           cGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTc                                    >  1:882103/1‑122 (MQ=255)                                                                                                                                            ggAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTGCTGGa       <  2:959155/150‑1 (MQ=255)                                                                                                                                                 tGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTGCTGGAGCAgg  <  2:730450/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                 TGGTCGGGGTGCTGCGCCTGTTTGCCAAGCTGCCCTGGGGCGCTGTGCAGCGTGTCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTGCTGGAGCAGG  >  NC_002947/73550‑73843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.