New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	73699 =	47 (1.040)	4 (0.090)	4/244	NT	8.0%	coding (175/888 nt)	PP_0063	lipid A biosynthesis lauroyl acyltransferase
	?	NC_002947	73721 =	46 (1.040)					coding (197/888 nt)	PP_0063	lipid A biosynthesis lauroyl acyltransferase

CCAAGCTGCCCTGGGGCGCTGTGCAGCGTGTCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTGCTGGAGCAGGCCCTGGCCTCGGGTAAAGGCGTGGTC  >  NC_002947/73574‑73869                                                                                                                                                    |                                                                                                                                                     ccAAGCTGCCCTGGGGTGCTGTGCAGCGGGTCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACtggtgg                                                                                                                                                    <  2:191409/150‑1 (MQ=255) ccAAGCTGCCCTGGGGCGCTGTGCAGCGTGTCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACtggtgg                                                                                                                                                    >  2:54333/1‑150 (MQ=255)    aGCTGCCCTGGGGCGCTGTGCAGCGTGTCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGcc                                                                                                                                                 <  1:54333/150‑1 (MQ=255)      cTGCCCTGGGGCGCTGTGCAGCGTGTCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAg                                                                                                                                               <  2:1144002/150‑1 (MQ=255)                          gCGTGTCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTaa                                                                                                                           <  2:940170/150‑1 (MQ=255)                            gtgtCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACtggtgg                                                                                                                                                    >  1:1126868/1‑123 (MQ=255)                            gtgtCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACtggtgg                                                                                                                                                    <  2:1126868/123‑1 (MQ=255)                               tCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGATGCGGGATATCGGTAAATCCt                                                                                                                      <  1:401709/150‑1 (MQ=255)                                  gCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATc                                                                                                                                <  2:291072/137‑1 (MQ=255)                                  gCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATc                                                                                                                                >  1:291072/1‑137 (MQ=255)                                    aCCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAg                                                                                                                                               >  2:728356/1‑120 (MQ=255)                                    aCCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAg                                                                                                                                               <  1:728356/120‑1 (MQ=255)                                              gctggctgATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAgtgcct                                                                                                       <  2:377296/150‑1 (MQ=255)                                                        gtgGACGATCCCCACCGGTGCGCGCAACGTGGTACGGATCAAGCTGGCCAAATGCTTCCGGGAGACGGACCCGGTTGCCCGGGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGAt                                                                                             <  2:528015/150‑1 (MQ=255)                                                               aTCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGgccg                                                                                      >  2:474967/1‑150 (MQ=255)                                                                  cccAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGccgccg                                                                                   >  1:349693/1‑150 (MQ=255)                                                                   ccAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAgt                                                                                                           >  2:1016561/1‑125 (MQ=255)                                                                   ccAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAgt                                                                                                           <  1:1016561/125‑1 (MQ=255)                                                                   ccAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCcgccgc                                                                                  >  2:506208/1‑150 (MQ=255)                                                                    cAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTgg                                                                                         >  1:256540/1‑142 (MQ=255)                                                                    cAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTgg                                                                                         <  2:256540/142‑1 (MQ=255)                                                                     aaCAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCaa                                                                                <  1:473555/150‑1 (MQ=255)                                                                     aaCAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTAGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCaa                                                                                >  1:1035350/1‑150 (MQ=255)                                                                             gcgcAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAAcgctcgct                                                                        <  1:782851/150‑1 (MQ=255)                                                                              cgcAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTg                                                                       <  1:474967/150‑1 (MQ=255)                                                                                 aaCGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAg                                                                    >  1:201470/1‑150 (MQ=255)                                                                                 aaCGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAg                                                                    <  2:1135110/150‑1 (MQ=255)                                                                                   cGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCt                                                                  >  1:1020142/1‑150 (MQ=255)                                                                                        tACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAg                                                                                                                                               >  1:358297/1‑68 (MQ=255)                                                                                        tACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAg                                                                                                                                               <  2:358297/68‑1 (MQ=255)                                                                                        gacaaaggatttaccgatatcccgcagcgcctggcccaccggttgcccgtgagcaactggTGGGCCAGGCGCTGCGGGATATCGGTAAATCCttt                                                                                                                    <  2:750681‑M2/35‑1 (MQ=255)                                                                                        gacaaaggatttaccgatatcccgcagcgcctggcccaccggttgcccgtgagcaactggTGGGCCAGGCGCTGCGGGATATCGGTAAATCCttt                                                                                                                    >  1:750681‑M2/61‑95 (MQ=255)                                                                                           ggATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGcc                                                                                                                                                 <  2:852337/63‑1 (MQ=255)                                                                                           ggATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGcc                                                                                                                                                 >  1:852337/1‑63 (MQ=255)                                                                                           aaaggatttaccgatatcccgcagcgcctggcccaCCAGTTGCTCACGGGCAACCGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTc                                                                                                                 >  1:750681‑M1/36‑95 (MQ=255)                                                                                           aaaggatttaccgatatcccgcagcgcctggcccaCCAGTTGCTCACGGGCAACCGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTc                                                                                                                 <  2:750681‑M1/60‑1 (MQ=255)                                                                                            aaggatttaccgatatcccgcagcgcctggcccaCCGGTTGCCCGTGAGCAACtggtgg                                                                                                                                                    <  2:118270‑M1/25‑1 (MQ=255)                                                                                            aaggatttaccgatatcccgcagcgcctggcccaCCGGTTGCCCGTGAGCAACtggtgg                                                                                                                                                    >  1:118270‑M1/35‑59 (MQ=255)                                                                                             aTCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTTCCCGTGAGCAACTGGTGGGCCAGTCGTTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGTCGCAACGCTCGCTGGATCTGGTCAAGGaa                                                        <  2:344310/150‑1 (MQ=255)                                                                                              tCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAg                                                       >  1:1074541/1‑150 (MQ=255)                                                                                                 aCCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGc                                                    >  1:1177597/1‑150 (MQ=255)                                                                                                   cTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCAt                                                  >  1:609931/1‑150 (MQ=255)                                                                                                     ggCCAAATGCTGCCCGGAGATGGACCCGGTTGCCTGTGGGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTACATCTTCTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATgg                                                <  2:232028/150‑1 (MQ=255)                                                                                                         gaaTGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAgtgcctgtgcct                                                                                                 >  2:825251/2‑97 (MQ=255)                                                                                                         aaaTGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAgtgcctgtgcct                                                                                                 <  1:825251/97‑1 (MQ=255)                                                                                                               ttCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTg                                      >  1:964350/1‑150 (MQ=255)                                                                                                                 cccGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTGCt                                    <  2:201470/150‑1 (MQ=255)                                                                                                                   cGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTc                                                              <  2:882103/122‑1 (MQ=255)                                                                                                                   cGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTc                                                              >  1:882103/1‑122 (MQ=255)                                                                                                                    ggAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTGCTGGa                                 <  2:959155/150‑1 (MQ=255)                                                                                                                         tGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTGCTGGAGCAgg                            <  2:730450/150‑1 (MQ=255)                                                                                                                           ccaccagttgctcacgggcaaccggTGGGCCAGGCGCTGCGGGATATCGGTAAATCCtt                                                                                                                     >  1:118270‑M2/26‑59 (MQ=255)                                                                                                                           ccaccagttgctcacgggcaaccggTGGGCCAGGCGCTGCGGGATATCGGTAAATCCtt                                                                                                                     <  2:118270‑M2/34‑1 (MQ=255)                                                                                                                                     cccGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTGCTGGAGCAGGCCCTGGCCTCgg                <  2:964350/150‑1 (MQ=255)                                                                                                                                     cccGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTGCTGGAGCAGGCCCTGGCCTCgg                >  2:869932/1‑150 (MQ=255)                                                                                                                                      ccGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTGCTGGAGCAGGCCCTGGCCTCggg               >  1:931025/1‑150 (MQ=255)                                                                                                                                       ggTGAGCAACTGGTGGGCCAGGCGCAGCGGGGTATCGGTAGATCCTTTGTCGAACGTGCCTGTGCCTGGATCTGGCCGCCGCCACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTGCTGGACCAGGCCCTGGCCTCGGGt              >  2:121570/2‑150 (MQ=255)                                                                                                                                           aGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTGCTGGAGCAGGCCCTGGCCTCGGGTAAAg          <  2:1177597/150‑1 (MQ=255)                                                                                                                                             cAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTGCTGGAGCAGGCCCTGGCCTCGGGTAAAGGc        >  2:963899/1‑150 (MQ=255)                                                                                                                                                 tggtggGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTGCTGGAGCAGGCCCTGGCCTCGGGTAAAGGCGTgg    <  2:1074541/150‑1 (MQ=255)                                                                                                                                                   gTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGACTGAATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTGCTGGAGCAGGCCCTGGCCTCGGGTAAAGGCGTGGTc  >  1:1052911‑M2/2‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CCAAGCTGCCCTGGGGCGCTGTGCAGCGTGTCGGCACCGGTATTGGCTGGCTGATGTGGAAAATCCCCAACAGTTCGCGCAACGTGGTACGGATCAACCTGGCCAAATGCTTCCCGGAGATGGACCCGGTTGCCCGTGAGCAACTGGTGGGCCAGGCGCTGCGGGATATCGGTAAATCCTTTGTCGAAAGTGCCTGTGCCTGGATCTGGCCGCCGCAACGCTCGCTGGAGCTGGTCAAGGAAGTGCATGGCCTGGAAGTGCTGGAGCAGGCCCTGGCCTCGGGTAAAGGCGTGGTC  >  NC_002947/73574‑73869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.