New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1315819 =	49 (1.090)	3 (0.070)	3/236	NT	7.0%	coding (248/330 nt)	PP_1147	hypothetical protein
	?	NC_002947	1315855 =	33 (0.770)					coding (284/330 nt)	PP_1147	hypothetical protein

GCCTGCGTCCGGCGAAAGTGCCATTGACCTCAAGCGCCAGCGCGACCCGCAGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGACATCGAAGTCTGATACGGGGCTGGTCAGCGCCTGCGCCTGGCTTCATCATGCAATTCTCTGTTGATCGTCGAG  >  NC_002947/1315670‑1315961                                                                                                                                                      |                                                                                                                                               gCCTGCGTCCGGCGAAAGTGCCATTGACCTCAAGCGCCAGCGCGACCCGCAGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGt                                                                                                                                                <  1:132620/150‑1 (MQ=255)        tCCGGCGAAAGTGCCATTGACCTCAAGCGCCAGCGCGACCCGCAGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGcc                                                                                                                                         <  1:797435/150‑1 (MQ=255)          cGGCGAAAGTGCCATTGACCTCAAGCGCCAGCGCGACCCGCAGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGa                                                                                                                                       <  1:418011/150‑1 (MQ=255)           ggCGAAAGTGCCATTGACCTCAAGCGCCAGCGCGACCCGCAGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGTCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGac                                                                                                                                      >  2:66256/1‑150 (MQ=255)           ggCGAAAGTGCCATTGACCTCAAGCGCCAGCGCGACCCGCAGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGac                                                                                                                                      >  1:482255/1‑150 (MQ=255)                   tGCCATTGACCTCAAGCGCCAGCGCGACCCGCAGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGt                                                                                                                              >  2:328693/1‑150 (MQ=255)                      gagtGACCGAAAGGGCCGGTGCGCCCTGCAGGAGCAGGTATTGTTTCTTCGCAAGGAACAGCGCCGCCAGCAGCGACGCCGGAACGAGCGCGAGCAGTAACCCTACGAGGCCCTCCCTGGTGACGAGGCAAATGCAGACAACACCGTGcc                                                                                                                           <  2:190734/147‑1 (MQ=255)                      cATTGACCTCAAGCGCCAGCGCGACCCGCAGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGcc                                                                                                                           >  1:97700/1‑150 (MQ=255)                       aTTGACCTCAAGCGCCAGCGCGACCCGCAGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCg                                                                                                                          >  1:794719/1‑150 (MQ=255)                       aTTGACCTCAAGCGCCAGCGCGACCCGCAGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCg                                                                                                                          <  2:482255/150‑1 (MQ=255)                           aCCTCAAGCGCCAGCGCGACCCGCAGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAg                                                                                                                      >  1:732820/1‑150 (MQ=255)                                    gcCAGCGCGACCCGCAGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGa                                                                                                             <  1:216080/150‑1 (MQ=255)                                    gcCAGCGCGACCCGCAGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGa                                                                                                             >  2:28521/1‑150 (MQ=255)                                         agttagatgatgaacagaggtttgcatgatgaagccaggcgcaggcgctgaccagccccgtatcacactgcgatgtccaccagcagtccttggcgtacatgctcgcccaTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGc                                                                                                        >  1:74909‑M1/110‑150 (MQ=255)                                               ccGCAGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGacaaca                                                                                                                                  >  2:1078937/1‑118 (MQ=255)                                               ccGCAGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGacaaca                                                                                                                                  <  1:1078937/118‑1 (MQ=255)                                               ccGCAGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGa                                                                                                                                       <  2:727629/113‑1 (MQ=255)                                               ccGCAGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGa                                                                                                                                       >  1:727629/1‑113 (MQ=255)                                                   aGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTAc                                                                                              >  1:769418/1‑150 (MQ=255)                                                         aGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTTTCTGCCGACAACTCCTTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAg                                                                                        <  1:328693/150‑1 (MQ=255)                                                            tATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGAc                                                                                     <  2:314353/150‑1 (MQ=255)                                                            tATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGAc                                                                                     <  2:97700/150‑1 (MQ=255)                                                                          gATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCAtt                                                                                                               >  2:5109/1‑110 (MQ=255)                                                                          gATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCAtt                                                                                                               <  1:5109/110‑1 (MQ=255)                                                                               aCAGCGCCGCCAGCAGCAACGCCGGAACACGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGACATCGAAGt                                                                  >  1:632032/1‑150 (MQ=255)                                                                                     ccgccAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGACATCGAAGTCTGATa                                                            <  1:28521/150‑1 (MQ=255)                                                                                     ccgccAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGACATCGAAGTCTGATa                                                            <  2:1109515/150‑1 (MQ=255)                                                                                        tcagcagCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGACATCGAAGTCTGATACgg                                                         <  1:66256/149‑1 (MQ=255)                                                                                        ccAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATg                                                                                                                                           <  1:1076543/68‑1 (MQ=255)                                                                                        ccAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATg                                                                                                                                           >  2:1076543/1‑68 (MQ=255)                                                                                         tgaccagccccgtatcagacttcgatgtccaccagcagtccttggcgtacatgctcgcccaTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCtggtg                                                                             >  1:840229‑M1/62‑129 (MQ=255)                                                                                         tgaccagccccgtatcagacttcgatgtccaccagcagtccttggcgtacatgctcgcccaTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCtggtg                                                                             <  2:840229‑M1/68‑1 (MQ=255)                                                                                           gcagcaACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGACATCGAAGTCTGATACGGGGc                                                      <  2:769418/150‑1 (MQ=255)                                                                                             accaACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGACATCGAAGTCTGATACGGGGCTg                                                    <  1:831959/148‑1 (MQ=255)                                                                                                aaCGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAg                                                                                                     <  2:240030/98‑1 (MQ=255)                                                                                                aaCGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAg                                                                                                     >  1:240030/1‑98 (MQ=255)                                                                                                   cccGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCTGACAACACCGTGCCAGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGCTAGACATCGAAGTCTGATACGGGGCTGGTCAgc                                              <  2:393453/149‑1 (MQ=255)                                                                                                    ccGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAg                                                                                        <  2:132633/107‑1 (MQ=255)                                                                                                    ccGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAg                                                                                        >  1:132633/1‑107 (MQ=255)                                                                                                      ggAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGACATCGAAGTCTGATACGGGGCTGGTCAgcgcc                                           >  2:934088/1‑150 (MQ=255)                                                                                                             gggCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAg                                                                                        >  2:272893/1‑98 (MQ=255)                                                                                                             gggCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAg                                                                                        <  1:272893/98‑1 (MQ=255)                                                                                                              ggCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAACGACTGCTGGTGGACATCGAAGTCTGATACGGGGCTGGTCAGcgcctgcgcctg                                   <  1:689352/150‑1 (MQ=255)                                                                                                                cGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGACATCGAAGTCTGATACGGGGCTGGTCAGCGCCTGCGCCTGGc                                 <  2:732820/150‑1 (MQ=255)                                                                                                                   gCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGACATCGAAGTCTGATACGGGGCTGGTCAGCGCCTGCGCCTGGCTtc                              <  1:764522/150‑1 (MQ=255)                                                                                                                             tACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGACATCGAAGTCTGATACGGGGCTGGTCAGCGCCTGCGCCTGGCTTCATCATGCAAt                    >  2:3624/1‑150 (MQ=255)                                                                                                                                  ggCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGACATCGAAGTCTGATACGGGGCTgg                                                   >  2:674831/1‑114 (MQ=255)                                                                                                                                  ggCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGACATCGAAGTCTGATACGGGGCTgg                                                   <  1:674831/114‑1 (MQ=255)                                                                                                                                           gggTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCAACAACGCCAAGGACTTCGAATGGACATCGAAGTCTGATACGGGGCTGGTCAGCGCCTGCGCCTGGCTTCATCATGCAATTCTCTGTTGAtcgt      >  1:749970/1‑150 (MQ=255)                                                                                                                                           gggTGACGAGGGCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGACATCGAAGTCTGATACGGGGCTGGTCAGCGCCTGCGCCTGGCTTCATCATGCAATTCTCTGTTGAtcgt      <  1:934088/150‑1 (MQ=255)                                                                                                                                            ggTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGACATCGAAGTCTGATACGGGGCTGGTCAGCGCCTGCGCCTGGCTtca                             >  2:433166/1‑126 (MQ=255)                                                                                                                                            ggTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGACATCGAAGTCTGATACGGGGCTGGTCAGCGCCTGCGCCTGGCTtca                             <  1:433166/126‑1 (MQ=255)                                                                                                                                               gACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGACATCGAAGTCTGATACGGGGCTGGTCAGCGCCTGCGCCTGGCTTCATCATGCAATTCTCTGTTGATCGTCGAg  >  1:676056/1‑150 (MQ=255)                                                                                                                                                   aGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGGCATCGAAGTCTGATACGGGGCTGGTCAGCGCCTGCGCCTGGCTTCATCATGCAATTCTCTg              <  2:339778/134‑1 (MQ=255)                                                                                                                                                   aGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGGCATCGAAGTCTGATACGGGGCTGGTCAGCGCCTGCGCCTGGCTTCATCATGCAATTCTCTg              >  1:339778/1‑134 (MQ=255)                                                                                                                                                      |                                                                                                                                               GCCTGCGTCCGGCGAAAGTGCCATTGACCTCAAGCGCCAGCGCGACCCGCAGGAGCAGGTATTGTTGCTGCGCGATGAACAGCGCCGCCAGCAGCAACGCCGGAACAAGGGCGAGCAGGAACGCTACGAGGCCGTCCCGGGTGACGAGGTCAATGCCGACAACACCGTGCCGGTAGCGCCATTGATGGGCGAGCATGTACGCCAAGGACTGCTGGTGGACATCGAAGTCTGATACGGGGCTGGTCAGCGCCTGCGCCTGGCTTCATCATGCAATTCTCTGTTGATCGTCGAG  >  NC_002947/1315670‑1315961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.