New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1409082	37 (0.820)	12 (0.270)	9/240	NT	25.1%	intergenic (+20/‑255)	PP_1230/nadA	hypothetical protein/quinolinate synthase iron‑sulfur cluster subunit
	?	NC_002947	= 1409146	36 (0.820)					intergenic (+84/‑191)	PP_1230/nadA	hypothetical protein/quinolinate synthase iron‑sulfur cluster subunit

GATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCA  >  NC_002947/1408937‑1409231                                                                                                                                                  |                                                                                                                                                      gatgatGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCtt                                                                                                                                                   >  1:895901/1‑150 (MQ=255)      tgtgGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCgg                                                                                                                                              <  2:874152/150‑1 (MQ=255)        tgGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGt                                                                                                                                            >  1:1025444/1‑150 (MQ=255)        tgGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGt                                                                                                                                            <  2:1072678/150‑1 (MQ=255)        tgGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGt                                                                                                                                            >  1:44165/1‑150 (MQ=255)         ggTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTg                                                                                                                                           <  2:294561/150‑1 (MQ=255)           tCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGaa                                                                                                                                         >  2:1141627/1‑150 (MQ=255)            cagcagCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAAc                                                                                                                                        <  2:829871/150‑1 (MQ=255)                            gCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGAt                                                                                                                        >  2:511238/1‑150 (MQ=255)                                  ggCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTcaca                                                                                                                  <  2:392022/150‑1 (MQ=255)                                        gTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAg                                                                                                            <  2:1025444/150‑1 (MQ=255)                                           gATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGa                                                                                                                            <  2:4433/131‑1 (MQ=255)                                           gATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGa                                                                                                                            >  1:4433/1‑131 (MQ=255)                                            aTTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGc                                                                                                        <  1:829787/150‑1 (MQ=255)                                                      ccGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCAccc                                                                                              <  2:731515/150‑1 (MQ=255)                                                        gAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCtcttcgcgggtgaacccgcccctacactgtgaaatcctcgtaggagcgggt                                                                                                    <  1:235935‑M1/142‑52 (MQ=255)                                                        gAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCtcttcgcgggtgaacccgcccctacactgtgaaatcctcgtaggagcgggt                                                                                                    >  2:235935‑M1/1‑91 (MQ=255)                                                        gAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCATACGAGGATTTCACAGTGTAGGGGCGGGTTCACCcgc                                                                                            <  2:895901/150‑1 (MQ=255)                                                               gACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGgg                                                                                     >  1:1141627‑M2/1‑148 (MQ=255)                                                                  cGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCccttcgcgggtgaacccgcccctacactgtgaaatcctcgtaggagcgggttcacccgcgaa                                                                                         >  1:385462‑M1/1‑81 (MQ=255)                                                                  cGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCccttcgcgggtgaacccgcccctacactgtgaaatcctcgtaggagcgggttcacccgcgaa                                                                                         <  2:385462‑M1/143‑63 (MQ=255)                                                                    ttGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCccttcgcgggtgaacccgcccctacactgtgaaatcctcgtaggagcgg                                                                                                      >  1:1159130‑M1/1‑79 (MQ=255)                                                                    ttGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCccttcgcgggtgaacccgcccctacactgtgaaatcctcgtaggagcgg                                                                                                      <  2:1159130‑M1/128‑50 (MQ=255)                                                                    ttGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGcccac                                                                                >  2:606328/1‑148 (MQ=255)                                                                    ttGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGc                                                                                >  2:1032164/1‑150 (MQ=255)                                                                    ttGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGGGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGGTCACCCGCGAAGGGGCCCGc                                                                                >  1:738875/1‑150 (MQ=255)                                                                      gaagaaTTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCtcttcgcgggtgaacccgcccctacactgtgaaatcctcgtaggagc                                                                                                        <  2:615024‑M1/124‑48 (MQ=255)                                                                      gaagaaTTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCtcttcgcgggtgaacccgcccctacactgtgaaatcctcgtaggagc                                                                                                        >  1:615024‑M1/1‑77 (MQ=255)                                                                         gaaTTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAg                                                                           <  2:940965/150‑1 (MQ=255)                                                                           aTTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCa                                                                         <  1:473794/150‑1 (MQ=255)                                                                                  aTGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTc                                                                                                                                  >  2:755646/1‑86 (MQ=255)                                                                                  aTGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTc                                                                                                                                  <  1:755646/86‑1 (MQ=255)                                                                                         tGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCt                                                           >  2:1196502/1‑150 (MQ=255)                                                                                                gcATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCtcttcgcgggtgaacccgcccctacactgtgaaatcctcgtaggagcgg                                                                                                      <  2:665039‑M1/100‑50 (MQ=255)                                                                                                gcATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCtcttcgcgggtgaacccgcccctacactgtgaaatcctcgtaggagcgg                                                                                                      >  1:665039‑M1/1‑51 (MQ=255)                                                                                                gcATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCccttcgcgggtgaacccgcccctacactgtgaaatcctcgtaggagcgg                                                                                                      <  2:743882‑M1/100‑50 (MQ=255)                                                                                                gcATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCccttcgcgggtgaacccgcccctacactgtgaaatcctcgtaggagcgg                                                                                                      >  1:743882‑M1/1‑51 (MQ=255)                                                                                                gcATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGaa                                                                                         <  1:402870/113‑1 (MQ=255)                                                                                                gcATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGaa                                                                                         >  2:402870/1‑113 (MQ=255)                                                                                                   tCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCtt                                                          <  2:367203/141‑1 (MQ=255)                                                                                                   tCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCtt                                                          >  1:367203/1‑141 (MQ=255)                                                                                                                  gccgcAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACaaaaa                                                                <  2:997792/120‑1 (MQ=255)                                                                                                                  gccgcAGGGGTGATGGTTTCTCCTGTTGCAGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACaaaaa                                                                >  1:997792/1‑120 (MQ=255)                                                                                                                        ggggTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTGCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGATGGATTGTCTGTAGCCTTCg                            >  1:880322/1‑150 (MQ=255)                                                                                                                           gggATTGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGcc                         >  1:347640/3‑150 (MQ=255)                                                                                                                            tGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCt                        >  2:901785/1‑150 (MQ=255)                                                                                                                              aTGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGTGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTcc                      >  2:1061908/1‑150 (MQ=255)                                                                                                                                     ctcCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGataata               >  1:28171/1‑150 (MQ=255)                                                                                                                                       ccTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATaataat             <  1:1196502/150‑1 (MQ=255)                                                                                                                                        cTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATc            >  2:366670/1‑150 (MQ=255)                                                                                                                                         tGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACAGTGTACGGGCGGGTTCACCCGCGAAGGGGCGCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTACGGCCCCCGCTACTAATcg           >  2:532815/1‑149 (MQ=38)                                                                                                                                               ggCCTCTGCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGccc     <  2:1113341/150‑1 (MQ=255)                                                                                                                                                gCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCg    >  2:451510/1‑150 (MQ=255)                                                                                                                                                 ccccttcgcgggtgaacccgcccctacactgtgaaatcctcgtaggagcgggttcacccgcgaagaggccgcaacaggagaaaccatcacccctgcggcgacagggcccccagatgcgccgccatgaacatggcaaattcttcaacggtc   >  1:1141627‑M1/1‑2 (MQ=255)                                                                                                                                                  ctctTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCa  <  1:901785/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                      GATGATGTGGTCAGCAGCCTGCACTATGCCGATGGCATGGTCGATTTCAATGGCCGAAAAATGACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCA  >  NC_002947/1408937‑1409231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.