New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1409082	37 (0.820)	12 (0.270)	9/240	NT	25.1%	intergenic (+20/‑255)	PP_1230/nadA	hypothetical protein/quinolinate synthase iron‑sulfur cluster subunit
	?	NC_002947	= 1409146	36 (0.820)					intergenic (+84/‑191)	PP_1230/nadA	hypothetical protein/quinolinate synthase iron‑sulfur cluster subunit

GACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCAGAGGGCCGTGGCGGTCAACATGCCGTCCGGCACCCTTAGCCGATCTGCCAGGGCCGGGTGATAC  >  NC_002947/1408999‑1409295                                                                                                                                                    |                                                                                                                                                      gACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGgg                                                                                                                                                     >  1:1141627‑M2/1‑148 (MQ=255)      ttGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGcccac                                                                                                                                                >  2:606328/1‑148 (MQ=255)      ttGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGc                                                                                                                                                >  2:1032164/1‑150 (MQ=255)      ttGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGGGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGGTCACCCGCGAAGGGGCCCGc                                                                                                                                                >  1:738875/1‑150 (MQ=255)           gaaTTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAg                                                                                                                                           <  2:940965/150‑1 (MQ=255)             aTTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCa                                                                                                                                         <  1:473794/150‑1 (MQ=255)                           tGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCt                                                                                                                           >  2:1196502/1‑150 (MQ=255)                                     tCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCtt                                                                                                                          <  2:367203/141‑1 (MQ=255)                                     tCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCtt                                                                                                                          >  1:367203/1‑141 (MQ=255)                                                    gccgcAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACaaaaa                                                                                                                                <  2:997792/120‑1 (MQ=255)                                                    gccgcAGGGGTGATGGTTTCTCCTGTTGCAGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACaaaaa                                                                                                                                >  1:997792/1‑120 (MQ=255)                                                          ggggTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTGCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGATGGATTGTCTGTAGCCTTCg                                                                                            >  1:880322/1‑150 (MQ=255)                                                             gggATTGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGcc                                                                                         >  1:347640/3‑150 (MQ=255)                                                              tGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCt                                                                                        >  2:901785/1‑150 (MQ=255)                                                                aTGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGTGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTcc                                                                                      >  2:1061908/1‑150 (MQ=255)                                                                       ctcCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGataata                                                                               >  1:28171/1‑150 (MQ=255)                                                                         ccTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATaataat                                                                             <  1:1196502/150‑1 (MQ=255)                                                                          cTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATc                                                                            >  2:366670/1‑150 (MQ=255)                                                                           tGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACAGTGTACGGGCGGGTTCACCCGCGAAGGGGCGCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTACGGCCCCCGCTACTAATcg                                                                           >  2:532815/1‑149 (MQ=38)                                                                                 ggCCTCTGCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGccc                                                                     <  2:1113341/150‑1 (MQ=255)                                                                                  gCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCg                                                                    >  2:451510/1‑150 (MQ=255)                                                                                    ctctTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCa                                                                  <  1:901785/150‑1 (MQ=255)                                                                                     tctTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCag                                                                 >  2:177512/1‑150 (MQ=255)                                                                                       ttCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGggccgcaacaggagaaaccatcacccctgcggcgacagggcccccagatgcgccgccatgaacatggcaaattcttcaacg                                                                      <  2:385462‑M2/143‑82 (MQ=255)                                                                                       ttCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGggccgcaacaggagaaaccatcacccctgcggcgacagggcccccagatgcgccgccatgaacatggcaaattcttcaacg                                                                      >  1:385462‑M2/1‑62 (MQ=255)                                                                                       ttCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCagag                                                               >  2:395038/1‑150 (MQ=255)                                                                                              gTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCACGAAGGGGCCCCCGCAAGCCCTCCCACAACCCCTTTAGTAATCGCGGAATTGTCTGTAGCGTTCCGCCTCCGATAATATTCCGCGCCCGCAGACGGCCGta                                                        >  2:359854/1‑149 (MQ=255)                                                                                                  aCCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGAggccgcaacaggagaaaccatcacccctgcggcgacagggcccccagatgcgccgccatgaacatggcaaattcttcaacggtcatttttc                                                            <  1:235935‑M2/142‑92 (MQ=255)                                                                                                  aCCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGAggccgcaacaggagaaaccatcacccctgcggcgacagggcccccagatgcgccgccatgaacatggcaaattcttcaacggtcatttttc                                                            >  2:235935‑M2/1‑51 (MQ=255)                                                                                                    ccGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGggccgcaacaggagaaaccatcacccctgcggcgacagggcccccagatgcgccgccatgaacatggcaaattcttcaa                                                                        <  2:1159130‑M2/128‑80 (MQ=255)                                                                                                    ccGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGggccgcaacaggagaaaccatcacccctgcggcgacagggcccccagatgcgccgccatgaacatggcaaattcttcaa                                                                        >  1:1159130‑M2/1‑49 (MQ=255)                                                                                                    ccGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGggccgcaacaggagaaaccatcacccctgcggcgacagggcccccagatgc                                                                                                    <  2:743882‑M2/100‑52 (MQ=255)                                                                                                    ccGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGggccgcaacaggagaaaccatcacccctgcggcgacagggcccccagatgc                                                                                                    >  1:743882‑M2/1‑49 (MQ=255)                                                                                                    ccGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGAggccgcaacaggagaaaccatcacccctgcggcgacagggcccccagatgc                                                                                                    <  2:665039‑M2/100‑52 (MQ=255)                                                                                                    ccGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGAggccgcaacaggagaaaccatcacccctgcggcgacagggcccccagatgc                                                                                                    >  1:665039‑M2/1‑49 (MQ=255)                                                                                                      gCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCAGAGGGCCGTGGCGGTCaa                                                <  1:1032164/150‑1 (MQ=255)                                                                                                      gCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGAggccgcaacaggagaaaccatcacccctgcggcgacagggcccccagatgcgccgccatgaacatggcaaattcttc                                                                          <  2:615024‑M2/124‑78 (MQ=255)                                                                                                      gCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGAggccgcaacaggagaaaccatcacccctgcggcgacagggcccccagatgcgccgccatgaacatggcaaattcttc                                                                          >  1:615024‑M2/1‑47 (MQ=255)                                                                                                      gCTCCGACGAGGATTTCACAGTGTAGGGGCGGGTCCACCCGCGCAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCAGAGGGCCGTGGCGGTCaa                                                <  2:738875/150‑1 (MQ=255)                                                                                                       cTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGTGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCAGAGGGCCGTGGCGGTCAAc                                               <  2:581630/150‑1 (MQ=255)                                                                                                           tACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTTTGTACCCTTTTGTCTCGGGTAAGAAGGCGCGCCCGCAGAGGGCCGTGGCGGTCAACATGc                                           <  1:511238/150‑1 (MQ=255)                                                                                                              gAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCAGAGGGCCGTGGCGGTCAACATGCCGt                                        >  2:103947/1‑150 (MQ=255)                                                                                                                ggATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCAGAGGGCCGTGGCGGTCAACATGCCGTcc                                      <  2:44165/150‑1 (MQ=255)                                                                                                                 gATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCAGAGGGCCGTGGCGGTCAACATGCCGTCCg                                     >  2:225517/1‑150 (MQ=255)                                                                                                                         agagtAGGGGCCGGTTCACCCGCCAGGGGGCCCCCACAAGCACGACAAAAACCCCTTCAGTAATCGCTGGATGGCCTGTAGCCTTCGCCCTCCGATAATAATCCGCGCCCGCAGAGGGCCGTGGCGGTCAACATGCCGTCCGGCACCCtt                             >  2:199521/4‑150 (MQ=255)                                                                                                                           tgtAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCg                                                                                            <  2:174253/85‑1 (MQ=255)                                                                                                                           tgtAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCg                                                                                            >  1:174253/1‑85 (MQ=255)                                                                                                                            gtAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCAGAGGGCCGTGGCGGTCAACATGCCGTCCGGCACCCTTAGc                          <  1:532815/150‑1 (MQ=255)                                                                                                                               ggggCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCAGAGGGCCGTGGCGGTCAACATGCCGTCCGGCACCCTTAGCCGa                       >  1:226669/1‑150 (MQ=255)                                                                                                                                        tCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCAGAGGGCCGTGGCGGTCAACATGCCGTCCGGCACCCTTAGCCGATCTGCCAgg              <  1:395038/150‑1 (MQ=255)                                                                                                                                            ccGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCAGAGGGCCGTGGCGGTCAACATGCCGTCCGGCACCCTTAGCCGATCTGCCAGGGCCg          >  2:244456/1‑150 (MQ=255)                                                                                                                                            ccGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCAGAGGGCCGTGGCGGTCAACATGCCGTCCGGCACCCTTAGCCGATCTGCCAGGGCCg          >  1:611228/1‑150 (MQ=255)                                                                                                                                                 aaGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCAGAGGGCCGTGGCGGTCAACATGCCGTCCGGCACCCTTAGCCGATCTGCCAGGGCCGGGTGa     <  1:177512/150‑1 (MQ=255)                                                                                                                                                  aGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCAGAGGGCCGTGGCGGTCAACATGCCGTCCGGCACCCTTAGCCGATCTGCCAGGGCCGGGTGAt    <  1:606328/150‑1 (MQ=255)                                                                                                                                                    gggCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCAGAGGGCCGTGGCGGTCAACATGCCGTCCGGCACCCTTAGCCGATCTGCCAGGGCCGGGTGATac  <  1:103947/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      GACCGTTGAAGAATTTGCCATGTTCATGGCGGCGCATCTGGGGGCCCTGTCGCCGCAGGGGTGATGGTTTCTCCTGTTGCGGCCTCTTCGCGGGTGAACCCGCTCCTACGAGGATTTCACAGTGTAGGGGCGGGTTCACCCGCGAAGGGGCCCGCACAAGCACTACAAAAACCCCTTTAGTAATCGCTGGATTGTCTGTAGCCTTCGGCCTCCGATAATAATCCGCGCCCGCAGAGGGCCGTGGCGGTCAACATGCCGTCCGGCACCCTTAGCCGATCTGCCAGGGCCGGGTGATAC  >  NC_002947/1408999‑1409295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.