New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1421050	40 (0.890)	4 (0.090)	4/234	NT	10.2%	coding (523/891 nt)	PP_1245	hypothetical protein
	?	NC_002947	= 1421063	33 (0.780)					coding (536/891 nt)	PP_1245	hypothetical protein

GGGCAAGGAATACACCAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGTCGAGCCCAAGGCGCAAGCGGTCGCCAAGCG  >  NC_002947/1420908‑1421198                                                                                                                                               |                                                                                                                                                     gggCAAGGAATACACCAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCCTAAGAGCCATCCTTAACGTGCGCGCCGCGCCTAACCAGTCTGGTGAGaa                                                                                                                                               <  2:834878/150‑1 (MQ=255)  ggCAAGGAGTACGCAATGACCAAGCAGGTCGAGGTGAAGCGCGTGCCGAAGGTCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCAGCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAg                                                                                                                                              <  2:552846/150‑1 (MQ=255)  ggCAAGGAATACACCAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAg                                                                                                                                              <  1:397596/150‑1 (MQ=255)    cAAGGAATACACCAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGt                                                                                                                                            <  1:1018659/150‑1 (MQ=255)         aaTACACCAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTCACCAGGCTGGTGAGAAGGTCGGca                                                                                                                                       >  1:342165‑M2/1‑148 (MQ=255)           tACACCAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGcagc                                                                                                                                     <  2:247547‑M2/150‑5 (MQ=255)              acCAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGcaggctg                                                                                                                                  <  1:87859‑M2/150‑8 (MQ=255)                cAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGc                                                                                                                                        >  2:601649‑M2/1‑141 (MQ=255)                cAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGc                                                                                                                                        <  1:601649‑M2/142‑2 (MQ=255)                cAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTgaa                                                                                                                                >  1:75953/1‑150 (MQ=255)                   aaCCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTgaa                                                                                                                                <  2:672840/147‑1 (MQ=255)                   aaCCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTgaa                                                                                                                                >  1:672840/1‑147 (MQ=255)                    aCCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAAc                                                                                                                            <  2:447213/150‑1 (MQ=255)                          gaGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACAcc                                                                                                                      <  2:1115031/149‑1 (MQ=255)                           aGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCg                                                                                                                     >  1:1037543/1‑150 (MQ=255)                              tCGTGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTTGATGAAGTTGATAAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCGGCGCCTAGCCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACAACACAGAAt                                                                                                                  >  2:869593/1‑150 (MQ=255)                                                cGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCa                                                                                                >  1:594851/1‑150 (MQ=255)                                                        cAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGAc                                                                                        <  1:881753/150‑1 (MQ=255)                                                         aGGCGGTGGCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCCCCGACAACCTCAACGTGCGCCCTGCGCCTCACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACCCCGAATTCACCCCCGTGGGCTTCACCGGTGACt                                                                                       <  2:87859/150‑1 (MQ=255)                                                         aGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACt                                                                                       <  2:75953/150‑1 (MQ=255)                                                         aGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACt                                                                                       >  2:1201245/1‑150 (MQ=255)                                                                 ccGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTg                                                                               <  1:1201245/150‑1 (MQ=255)                                                                   gTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTgg                                                                                                      <  2:1139764/125‑1 (MQ=255)                                                                   gTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTgg                                                                                                      >  1:1139764/1‑125 (MQ=255)                                                                          aaGTTGATCAACGAGCCGTATGTGACCATCAGTGACAACCTCAACGTGAGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGc                                                                      >  1:520442/1‑150 (MQ=255)                                                                                 tCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGccgaccttctcaccagcctggtt                                                                                                                               >  2:1033098‑M1/1‑63 (MQ=255)                                                                                 tCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGccgaccttctcaccagcctggtt                                                                                                                               <  1:1033098‑M1/86‑24 (MQ=255)                                                                                     cGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTc                                                                            >  2:1077909/1‑133 (MQ=255)                                                                                     cGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTc                                                                            <  1:1077909/133‑1 (MQ=255)                                                                                      gAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCAcc                                                                                                             <  2:863476/99‑1 (MQ=255)                                                                                      gAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCAcc                                                                                                             >  1:863476/1‑99 (MQ=255)                                                                                         ccGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTg                                                       <  1:1007033/150‑1 (MQ=255)                                                                                          tgTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTgg                                                      >  2:826790/2‑150 (MQ=255)                                                                                          cggaTGTGACCATCAGCGACAACCTTAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGGATTCACCGGCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGACGCAAGGGTTTGACCGTgg                                                      <  2:66887/147‑1 (MQ=255)                                                                                            tATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGc                                                    >  2:1136182/1‑150 (MQ=255)                                                                                                 gACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGccgaccttctcaccagcctggttaggcgcg                                                                                                                        >  1:900845‑M1/1‑47 (MQ=255)                                                                                                 gACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGccgaccttctcaccagcctggttaggcgcg                                                                                                                        <  2:900845‑M1/77‑31 (MQ=255)                                                                                                    cATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGca                                            >  1:614280/1‑150 (MQ=255)                                                                                                       cAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGANTGGATTNTGGTCGGCCGCANGGGTGTGACCGTGGGCTATGTGCACaa                                         <  1:1100232/150‑1 (MQ=255)                                                                                                           gACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAAc                                     >  2:1156233/1‑150 (MQ=255)                                                                                                            aCAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACt                                    <  1:732093/150‑1 (MQ=255)                                                                                                              aaCCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAgg                                                                  >  2:929860/1‑118 (MQ=255)                                                                                                              aaCCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAgg                                                                  <  1:929860/118‑1 (MQ=255)                                                                                                                 cTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCgg                                                                                            <  2:407781/89‑1 (MQ=255)                                                                                                                 cTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCgg                                                                                            >  1:407781/1‑89 (MQ=255)                                                                                                                 cTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGTc                               >  2:715563/1‑150 (MQ=255)                                                                                                                 cTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGTc                               >  1:407710/1‑150 (MQ=255)                                                                                                                   cAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGTCGa                             <  1:1136182/150‑1 (MQ=255)                                                                                                                         gcgcgcCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGTCGAGCCCaa                       <  2:594851/150‑1 (MQ=255)                                                                                                                               cgcgccTAACCAGGCTGGTGAGAAGGTCGGcagcctggttaggcgcggcgcgcacgttgaggttgtcgctgatggtc                                                                                          >  1:900845‑M2/1‑30 (MQ=255)                                                                                                                               cgcgccTAACCAGGCTGGTGAGAAGGTCGGcagcctggttaggcgcggcgcgcacgttgaggttgtcgctgatggtc                                                                                          <  2:900845‑M2/77‑48 (MQ=255)                                                                                                                                      aaCCAGGCTGGTGAGAAGGTCGGcagcctggttaggcgcggcgcgcacgttgaggttgtcgctgatggtcacatacggctcgttga                                                                          >  2:1033098‑M2/1‑23 (MQ=255)                                                                                                                                      aaCCAGGCTGGTGAGAAGGTCGGcagcctggttaggcgcggcgcgcacgttgaggttgtcgctgatggtcacatacggctcgttga                                                                          <  1:1033098‑M2/86‑64 (MQ=255)                                                                                                                                         cAGCCTGccgaccttctcaccagcctggttaggcgcggcgcgcacgttgaggttgtcgctgatggtcacatacggctcgttgatcaacttcatcgacggcaccgcctggatcttcggcgcgcgcttgacctcgacctgcttggttttggt       <  1:87859‑M1/150‑144 (MQ=255)                                                                                                                                            gCTGccgaccttctcaccagcctggttaggcgcggcgcgcacgttgaggttgtcgctgatggtcacatacggctcgttgatcaacttcatcgacggcaccgcctggatcttcggcgcgcgcttgacctcgacctgcttggttttggtgta    <  2:247547‑M1/150‑147 (MQ=255)                                                                                                                                              tGccgaccttctcaccagcctggtgaggcgcggcgcgcacgttgaggttgtcgctgatggtcacatacggctcgttgatcaacttcatcgacggcaccgcctggatcttcggcgcgcgcttgacctcgacctgcttggttttggtgtatt  >  1:342165‑M1/1‑2 (MQ=255)                                                                                                                                               gccgaccttctcaccagcctggttaggcgcggcgcgcacgttgaggttgtcgctgatggtcacatacggctcgttgatcaacttcatcgacggcaccgcctggatcttcggcgcgcgcttgacctcgacctgcttggttttg         >  2:601649‑M1/1‑1 (MQ=255)                                                                                                                                               gccgaccttctcaccagcctggttaggcgcggcgcgcacgttgaggttgtcgctgatggtcacatacggctcgttgatcaacttcatcgacggcaccgcctggatcttcggcgcgcgcttgacctcgacctgcttggttttg         <  1:601649‑M1/142‑142 (MQ=255)                                                                                                                                               |                                                                                                                                                     GGGCAAGGAATACACCAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGTCGAGCCCAAGGCGCAAGCGGTCGCCAAGCG  >  NC_002947/1420908‑1421198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.