New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1421050	40 (0.890)	4 (0.090)	4/234	NT	10.2%	coding (523/891 nt)	PP_1245	hypothetical protein
	?	NC_002947	= 1421063	33 (0.780)					coding (536/891 nt)	PP_1245	hypothetical protein

AATACACCAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGTCGAGCCCAA  >  NC_002947/1420916‑1421177                                                                                                                                                    |                                                                                                                   aaTACACCAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTCACCAGGCTGGTGAGAAGGTCGGca                                                                                                                  >  1:342165‑M2/1‑148 (MQ=255)   tACACCAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGcagc                                                                                                                <  2:247547‑M2/150‑5 (MQ=255)      acCAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGcaggctg                                                                                                             <  1:87859‑M2/150‑8 (MQ=255)        cAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGc                                                                                                                   >  2:601649‑M2/1‑141 (MQ=255)        cAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGc                                                                                                                   <  1:601649‑M2/142‑2 (MQ=255)        cAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTgaa                                                                                                           >  1:75953/1‑150 (MQ=255)           aaCCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTgaa                                                                                                           <  2:672840/147‑1 (MQ=255)           aaCCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTgaa                                                                                                           >  1:672840/1‑147 (MQ=255)            aCCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAAc                                                                                                       <  2:447213/150‑1 (MQ=255)                  gaGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACAcc                                                                                                 <  2:1115031/149‑1 (MQ=255)                   aGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCg                                                                                                >  1:1037543/1‑150 (MQ=255)                      tCGTGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTTGATGAAGTTGATAAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCGGCGCCTAGCCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACAACACAGAAt                                                                                             >  2:869593/1‑150 (MQ=255)                                        cGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCa                                                                           >  1:594851/1‑150 (MQ=255)                                                cAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGAc                                                                   <  1:881753/150‑1 (MQ=255)                                                 aGGCGGTGGCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCCCCGACAACCTCAACGTGCGCCCTGCGCCTCACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACCCCGAATTCACCCCCGTGGGCTTCACCGGTGACt                                                                  <  2:87859/150‑1 (MQ=255)                                                 aGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACt                                                                  >  2:1201245/1‑150 (MQ=255)                                                 aGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACt                                                                  <  2:75953/150‑1 (MQ=255)                                                         ccGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTg                                                          <  1:1201245/150‑1 (MQ=255)                                                           gTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTgg                                                                                 >  1:1139764/1‑125 (MQ=255)                                                           gTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTgg                                                                                 <  2:1139764/125‑1 (MQ=255)                                                                  aaGTTGATCAACGAGCCGTATGTGACCATCAGTGACAACCTCAACGTGAGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGc                                                 >  1:520442/1‑150 (MQ=255)                                                                             cGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTc                                                       <  1:1077909/133‑1 (MQ=255)                                                                             cGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTc                                                       >  2:1077909/1‑133 (MQ=255)                                                                              gAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCAcc                                                                                        <  2:863476/99‑1 (MQ=255)                                                                              gAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCAcc                                                                                        >  1:863476/1‑99 (MQ=255)                                                                                 ccGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTg                                  <  1:1007033/150‑1 (MQ=255)                                                                                  tgTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTgg                                 >  2:826790/2‑150 (MQ=255)                                                                                  cggaTGTGACCATCAGCGACAACCTTAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGGATTCACCGGCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGACGCAAGGGTTTGACCGTgg                                 <  2:66887/147‑1 (MQ=255)                                                                                    tATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGc                               >  2:1136182/1‑150 (MQ=255)                                                                                            cATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGca                       >  1:614280/1‑150 (MQ=255)                                                                                               cAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGANTGGATTNTGGTCGGCCGCANGGGTGTGACCGTGGGCTATGTGCACaa                    <  1:1100232/150‑1 (MQ=255)                                                                                                   gACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAAc                >  2:1156233/1‑150 (MQ=255)                                                                                                    aCAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACt               <  1:732093/150‑1 (MQ=255)                                                                                                      aaCCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAgg                                             <  1:929860/118‑1 (MQ=255)                                                                                                      aaCCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAgg                                             >  2:929860/1‑118 (MQ=255)                                                                                                         cTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCgg                                                                       <  2:407781/89‑1 (MQ=255)                                                                                                         cTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCgg                                                                       >  1:407781/1‑89 (MQ=255)                                                                                                         cTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGTc          >  2:715563/1‑150 (MQ=255)                                                                                                         cTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGTc          >  1:407710/1‑150 (MQ=255)                                                                                                           cAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGTCGa        <  1:1136182/150‑1 (MQ=255)                                                                                                                 gcgcgcCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGTCGAGCCCaa  <  2:594851/150‑1 (MQ=255)                                                                                                                       cgcgccTAACCAGGCTGGTGAGAAGGTCGGcagcctggttaggcgcggcgcgcacgttgaggttgtcgctgatggtc                                                                     >  1:900845‑M2/1‑30 (MQ=255)                                                                                                                       cgcgccTAACCAGGCTGGTGAGAAGGTCGGcagcctggttaggcgcggcgcgcacgttgaggttgtcgctgatggtc                                                                     <  2:900845‑M2/77‑48 (MQ=255)                                                                                                                              aaCCAGGCTGGTGAGAAGGTCGGcagcctggttaggcgcggcgcgcacgttgaggttgtcgctgatggtcacatacggctcgttga                                                     >  2:1033098‑M2/1‑23 (MQ=255)                                                                                                                              aaCCAGGCTGGTGAGAAGGTCGGcagcctggttaggcgcggcgcgcacgttgaggttgtcgctgatggtcacatacggctcgttga                                                     <  1:1033098‑M2/86‑64 (MQ=255)                                                                                                                                                    |                                                                                                                   AATACACCAAAACCAAGCAGGTCGAGGTCAAGCGCGCGCCGAAGATCCAGGCGGTGCCGTCGATGAAGTTGATCAACGAGCCGTATGTGACCATCAGCGACAACCTCAACGTGCGCGCCGCGCCTAACCAGGCTGGTGAGAAGGTCGGCAGCCTGAAGAACCACACCGAATTCACCGCCGTGGGCTCCACCGGTGACTGGATTCTGGTCGGCCGCAAGGGTGTGACCGTGGGCTATGTGCACAAGAACTACGTCGAGCCCAA  >  NC_002947/1420916‑1421177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.