New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1580097 =	35 (0.780)	4 (0.090)	4/232	NT	10.7%	coding (1342/3153 nt)	ttgB	efflux pump membrane protein TtgB
	?	NC_002947	1580126 =	34 (0.810)					coding (1313/3153 nt)	ttgB	efflux pump membrane protein TtgB

GCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCC  >  NC_002947/1579950‑1580239                                                                                                                                                    |                                                                                                                                               catcaacaccctgaccatgttcgccatggttctggccatcggcttgctggtggacgacgccatcgtcgtggtggagaacgtcgagcgggtcatgtccgaggaaggcttgccgcccaaggaagcgaccaaacgctcgatggaacagatCCa                                                                                                                                              <  1:1000276‑M1/3‑1 (MQ=255)  atcaacaccctgaccatgttcgccatggttctggccatcggcttgctggtggacgacgccatcgtcgtggtggagaacgtcgagcgggtcatgtccgaggaaggcttgccgcccaaggaagcgaccaaacgctcgatggaacagatCCAg                                                                                                                                             >  2:1000276‑M1/147‑150 (MQ=255)  atcaacaccctgaccatgttcgccatggttctggccatcggcttgctggtggacgacgccatcgtcgtggtggagaacgtcgagcgggtcatgtccgaggaaggcttgccgcccaaggaagcgaccaaacgctcgatggaacagatCCAg                                                                                                                                             >  1:465272‑M1/147‑150 (MQ=255)   tcaacaccctgaccatgttcgccatggttctggccatcggcttgctggtggacgacgccatcgtcgtggtggagaacgtcgagcgggtcatgtccgaggaaggcttgccgcccaaggaagcgaccaaacgctcgatggaacagatCCAgg                                                                                                                                            >  1:453927‑M1/146‑150 (MQ=255)   aTGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAgg                                                                                                                                            <  2:710397/150‑1 (MQ=255)      acaccctgaccatgttcgccatggttctggccatcggcttgctggtggacgacgccatcgtcgtggtggagaacgtcgagcgggtcatgtccgaggaaggcttgccgcccaaggaagcgaccaaacgctcgatggaacagatCCAGGGCg                                                                                                                                         >  1:160534‑M1/143‑150 (MQ=255)          cgcAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATAc                                                                                                                                     >  1:535012/1‑150 (MQ=255)                       ggTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGcc                                                                                                                        >  2:790204/1‑150 (MQ=255)                        gTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGccc                                                                                                                       >  2:790157/1‑150 (MQ=255)                                 aGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGt                                                                                                              <  1:790204/150‑1 (MQ=255)                                        ccAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACACACAAGGGCGCCATGGATCTGTTGCATCg                                                                                                       >  2:672154/1‑150 (MQ=255)                                            cACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCg                                                                                                   >  1:1160217/1‑150 (MQ=255)                                                 aCAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTgg                                                                                              <  1:790157/150‑1 (MQ=255)                                                     gCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGc                                                                                          >  2:298329/1‑150 (MQ=255)                                                       ccATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCtt                                                                                        <  2:1160217/150‑1 (MQ=255)                                                       ccATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCtt                                                                                        >  2:228312/1‑150 (MQ=255)                                                              cGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTggg                                                                                 <  2:1024510/150‑1 (MQ=255)                                                                           aTGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTcc                                                                    >  1:492813/1‑150 (MQ=255)                                                                              gagaACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCg                                                                 <  1:1003927/150‑1 (MQ=255)                                                                                   cTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACAt                                                            >  2:1187640/1‑150 (MQ=255)                                                                                    tGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGcc                                                                        >  2:507623/1‑137 (MQ=255)                                                                                    tGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGcc                                                                        <  1:507623/137‑1 (MQ=255)                                                                                    agcgggtcatgtccgaggaaggcttgccgcccaaggaagcgaccaaacgctcgatggaacagatCCAGGGCGATACCCACCAGGGCGCCCt                                                                                                                      <  2:72381‑M1/27‑1 (MQ=255)                                                                                    agcgggtcatgtccgaggaaggcttgccgcccaaggaagcgaccaaacgctcgatggaacagatCCAGGGCGATACCCACCAGGGCGCCCt                                                                                                                      >  1:72381‑M1/65‑91 (MQ=255)                                                                                      cgggtcatgtccgaggaaggcttgccgcccaaggaagcgaccaaacgctcgatggaacagatCCAGGGCGATACCCACCAGGGCGCCCTGGAt                                                                                                                  >  1:568323‑M1/63‑93 (MQ=255)                                                                                      cgggtcatgtccgaggaaggcttgccgcccaaggaagcgaccaaacgctcgatggaacagatCCAGGGCGATACCCACCAGGGCGCCCTGGAt                                                                                                                  <  2:568323‑M1/31‑1 (MQ=255)                                                                                        ggTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGAccc                                                       >  2:383927/1‑150 (MQ=255)                                                                                         gTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGTAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCg                                                      >  2:887926/1‑150 (MQ=255)                                                                                                  acCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGAc                                                         <  2:19992/138‑1 (MQ=255)                                                                                                  acCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGAc                                                         >  1:19992/1‑138 (MQ=255)                                                                                                      gTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAgt                                                                                                                             <  2:352001/66‑2 (MQ=255)                                                                                                      gTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAgg                                                                                                                             >  1:352001/1‑66 (MQ=255)                                                                                                            ccgccAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGCCGGCAAGCCTTCCCCGGACATGACCCGCTCGCCGTTCTCCCCCacg                                   >  2:213191/1‑150 (MQ=255)                                                                                                               ccAAAGAACGCCATGGGCAGCAGTAGGTCATTTTGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCacgacg                                >  1:221354/1‑150 (MQ=38)                                                                                                               ccAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCG‑TTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCAcgacga                               >  1:865871/1‑150 (MQ=255)                                                                                                                   aGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATgg                            >  2:528238/1‑150 (MQ=255)                                                                                                                     aaCGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGcg                          >  2:294759/1‑150 (MQ=255)                                                                                                                       cGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGcgtc                        <  1:298329/150‑1 (MQ=255)                                                                                                                         ccATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGa                                                               >  2:158814/1‑109 (MQ=255)                                                                                                                         ccATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGa                                                               <  1:158814/109‑1 (MQ=255)                                                                                                                             gggCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACTTTCTCCACCACGACGATGGCGTCGTccac                  >  2:1184185/1‑150 (MQ=255)                                                                                                                             gggCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTccac                  <  2:535012/150‑1 (MQ=255)                                                                                                                               gcagcaGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTccacca                <  1:672154/150‑1 (MQ=255)                                                                                                                                         ggCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGAt      <  1:1187640/150‑1 (MQ=255)                                                                                                                                             gagaGCACCAGGGCGATACCCACCAGGGCGCCCTGGAACGGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTACGTCGGCCATGACCCGCTCGACGTTCTCCACCACGACGATGGGGTCGTCCACCAGCAAGCCGATGGcc  >  1:400131/1‑150 (MQ=37)                                                                                                                                                   aCCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGc   <  1:876548/143‑1 (MQ=255)                                                                                                                                                   aCCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGc   >  2:876548/1‑143 (MQ=255)                                                                                                                                                    |                                                                                                                                               GCATGGTTGCGCAGAGCGCCGGGGTGAAGATCAGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCC  >  NC_002947/1579950‑1580239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.