New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1580097 =	35 (0.780)	4 (0.090)	4/232	NT	10.7%	coding (1342/3153 nt)	ttgB	efflux pump membrane protein TtgB
	?	NC_002947	1580126 =	34 (0.810)					coding (1313/3153 nt)	ttgB	efflux pump membrane protein TtgB

AGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGGTGTTGATGCTG  >  NC_002947/1579982‑1580275                                                                                                                                                 |                                                                                                                                                      aGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGt                                                                                                                                                  <  1:790204/150‑1 (MQ=255)        ccAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACACACAAGGGCGCCATGGATCTGTTGCATCg                                                                                                                                           >  2:672154/1‑150 (MQ=255)            cACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCg                                                                                                                                       >  1:1160217/1‑150 (MQ=255)                 aCAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTgg                                                                                                                                  <  1:790157/150‑1 (MQ=255)                     gCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGc                                                                                                                              >  2:298329/1‑150 (MQ=255)                       ccATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCtt                                                                                                                            >  2:228312/1‑150 (MQ=255)                       ccATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCtt                                                                                                                            <  2:1160217/150‑1 (MQ=255)                              cGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTggg                                                                                                                     <  2:1024510/150‑1 (MQ=255)                                           aTGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTcc                                                                                                        >  1:492813/1‑150 (MQ=255)                                              gagaACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCg                                                                                                     <  1:1003927/150‑1 (MQ=255)                                                   cTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACAt                                                                                                >  2:1187640/1‑150 (MQ=255)                                                    tGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGcc                                                                                                            >  2:507623/1‑137 (MQ=255)                                                    tGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGcc                                                                                                            <  1:507623/137‑1 (MQ=255)                                                      cgggtcatgtccgaggaaggcttgccgcccaaggaagcgaccaaacgctcgatggaacagatCCAGGGCGATACCCACCAGGGCGCCCTGGAt                                                                                                                                                      <  2:568323‑M1/31‑1 (MQ=255)                                                      cgggtcatgtccgaggaaggcttgccgcccaaggaagcgaccaaacgctcgatggaacagatCCAGGGCGATACCCACCAGGGCGCCCTGGAt                                                                                                                                                      >  1:568323‑M1/63‑93 (MQ=255)                                                        ggTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGAccc                                                                                           >  2:383927/1‑150 (MQ=255)                                                         gTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGTAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCg                                                                                          >  2:887926/1‑150 (MQ=255)                                                                  acCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGAc                                                                                             >  1:19992/1‑138 (MQ=255)                                                                  acCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGAc                                                                                             <  2:19992/138‑1 (MQ=255)                                                                            ccgccAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGCCGGCAAGCCTTCCCCGGACATGACCCGCTCGCCGTTCTCCCCCacg                                                                       >  2:213191/1‑150 (MQ=255)                                                                               ccAAAGAACGCCATGGGCAGCAGTAGGTCATTTTGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCacgacg                                                                    >  1:221354/1‑150 (MQ=38)                                                                               ccAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCG‑TTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCAcgacga                                                                   >  1:865871/1‑150 (MQ=255)                                                                                   aGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATgg                                                                >  2:528238/1‑150 (MQ=255)                                                                                     aaCGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGcg                                                              >  2:294759/1‑150 (MQ=255)                                                                                       cGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGcgtc                                                            <  1:298329/150‑1 (MQ=255)                                                                                         ccATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGa                                                                                                   <  1:158814/109‑1 (MQ=255)                                                                                         ccATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGa                                                                                                   >  2:158814/1‑109 (MQ=255)                                                                                             gggCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACTTTCTCCACCACGACGATGGCGTCGTccac                                                      >  2:1184185/1‑150 (MQ=255)                                                                                             gggCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTccac                                                      <  2:535012/150‑1 (MQ=255)                                                                                               gcagcaGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTccacca                                                    <  1:672154/150‑1 (MQ=255)                                                                                                         ggCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGAt                                          <  1:1187640/150‑1 (MQ=255)                                                                                                             gagaGCACCAGGGCGATACCCACCAGGGCGCCCTGGAACGGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTACGTCGGCCATGACCCGCTCGACGTTCTCCACCACGACGATGGGGTCGTCCACCAGCAAGCCGATGGcc                                      >  1:400131/1‑150 (MQ=37)                                                                                                                  atccagggcgccctggtgggtatcgccctggATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCg                                                                                          >  1:568323‑M2/32‑93 (MQ=255)                                                                                                                  atccagggcgccctggtgggtatcgccctggATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCg                                                                                          <  2:568323‑M2/62‑1 (MQ=255)                                                                                                                   aCCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGc                                       >  2:876548/1‑143 (MQ=255)                                                                                                                   aCCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGc                                       <  1:876548/143‑1 (MQ=255)                                                                                                                      agggcgccctggtgggtatcgccctggATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCt                                                                                        <  2:72381‑M2/64‑1 (MQ=255)                                                                                                                      agggcgccctggtgggtatcgccctggATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCt                                                                                        >  1:72381‑M2/28‑91 (MQ=255)                                                                                                                       GGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGACCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTCCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATgg                            <  1:1151514‑M1/150‑1 (MQ=255)                                                                                                                                ccacgaGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCACTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCTAGAACCATGGCGTACATgg                   >  1:473194/1‑150 (MQ=255)                                                                                                                                 caccaGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCACTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCTAGAACCATGGCGCACATGGt                  <  2:473194/150‑1 (MQ=255)                                                                                                                                    caGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAg               >  2:787339/1‑150 (MQ=255)                                                                                                                                         cgccctggATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGgtgt          >  1:160534‑M2/9‑150 (MQ=255)                                                                                                                                            cctggATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGGTGTTGa       >  1:453927‑M2/6‑150 (MQ=255)                                                                                                                                             ctggATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGGTGTTGAt      >  1:465272‑M2/5‑150 (MQ=255)                                                                                                                                             ctggATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGGTGTTGAt      >  2:1000276‑M2/5‑150 (MQ=255)                                                                                                                                              tggATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGGTGTTGATg     <  1:1000276‑M2/147‑1 (MQ=255)                                                                                                                                                 aTCTGTTCCATCGATCGTTTCGTCGCTTCCTTGGTCGGCAAGCCTTCCGCTGACATGACCCGCTCGACGTTCTCCACCACGACGTTGTCGTCGTCCACCAGCAAGCCTATGGCCAGAACCATGGCGAACATGGTCAGGGTGTTGATGCTg  <  2:492813/150‑1 (MQ=37)                                                                                                                                                 |                                                                                                                                                      AGCGCAACCAGCACCGACAGGCCCATGGCCGAGACGATGGTGATGGAGAACTGCCGGTAGATCACACCCGTGGAGCCGCCAAAGAACGCCATGGGCAGCAGTACGGCCGAGAGCACCAGGGCGATACCCACCAGGGCGCCCTGGATCTGTTCCATCGAGCGTTTGGTCGCTTCCTTGGGCGGCAAGCCTTCCTCGGACATGACCCGCTCGACGTTCTCCACCACGACGATGGCGTCGTCCACCAGCAAGCCGATGGCCAGAACCATGGCGAACATGGTCAGGGTGTTGATGCTG  >  NC_002947/1579982‑1580275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.