New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1666011 =	36 (0.800)	3 (0.070)	3/238	NT	8.4%	coding (760/852 nt)	PP_1460	membrane protein
	?	NC_002947	1666047 =	31 (0.720)					coding (724/852 nt)	PP_1460	membrane protein

GGCCAGTGCCAGAGTGCCGAATAGCGGTGCGTACGGCAGGGTGTCCATGGTCGGCCGTCAGATATGCAAGATGAATTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAGGCGACACAGGCCAGCAAGGTCTTGTGCGCCAGGTGCTGGGCGAACAGGTTGTCGAGGAACAGC  >  NC_002947/1665862‑1666132                                                                                                                                                      |                                                                                                                          ggCCAGTGCCAGAGTGCCGAATAGCGGTGCGTACGGCAGGGTGTCCATGGTCGGCCGTCAGATATGCAAGATGAATTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCAt                                                                                                                           <  2:965376/150‑1 (MQ=255)   tgctgttcggcttcctctgggccggctggtgcctgctgtcgctgtcgctgatctccggctggctgttcctcgacaacctgttcgcccagcacctggcgcacaagaccttgctggcctgtgtcgcctgggtggtgttcagcgtgctgctgt                                                                                                                         <  1:697078‑M1/3‑1 (MQ=255)   tgctgttcggcttcctctgggccggctggtgcctgctgtcgctgtcgctgatctccggctggctgttcctcgacaacctgttcgcccagcacctggcgcacaagaccttgctggcctgtgtcgcctgggtggtgttcagcgtgctgctgt                                                                                                                         <  1:1087652‑M1/3‑1 (MQ=255)     ctgttcggcttcctctgggccggctggtgcctgctgtcgctgtcgctgatctccggctggctgttcctcgacaacctgttcgcccagcacctggcgcacaagaccttgctggcctgtgtcgcctgggtggtgttcagcgtgctgcTGTgg                                                                                                                       >  2:941314‑M1/146‑150 (MQ=255)         acAGAGTGCCGAATAGCGGTGCGTACGGCAGGGTGTCCATGGTCGGCCGTCAGATATGCAAGATGAATTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGcccc                                                                                                                   <  1:897435/149‑1 (MQ=255)                  cGAATAGCGGTGCGTACGGCACGGTGTCCATGGTCGGCCGTCAGATATGCAAGAGGAATTCGCGAAGCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAAGCAGAAACCGCTCAGCGTCCAGCGGATGGCCGTGTGGCCCCGCCAACCCa                                                                                                          >  1:219392/1‑150 (MQ=255)                   gAATAGCGGTGCGTACGGCAGGGTGTCCATGGTCGGCCGTCAGATATGCAAGATGAATTCGCGAACCAGCTTGCTGCTGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAg                                                                                                         >  2:103844/1‑150 (MQ=255)                   gAATAGCGGTGCGTACGGCAGGGTGTCCATGGTCGGCCGTCAGATATGCAAGATGAATTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAg                                                                                                         >  1:576239/1‑150 (MQ=255)                         cGGTGCGTACGGCAGGGTGTCCATGGTCGGCCGTCAGATATGCAAGATGAATTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGt                                                                                                   <  1:1130498/150‑1 (MQ=255)                               gTACGGCAGGGTGTCCATGGTCGGCCGTCAGATATGCAAGATGAATTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGACCCCGCCACCCCAGGCGGCTGCGGcc                                                                                             >  2:193008/1‑150 (MQ=255)                                    tgctgtcgctgtcgctgatctccggctggctgttcctcgacaacctgttcgcccagcacctggcgcacaagaccttgctggcctgtgtcgcctgggtggtgttcagcgtgctgcTGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCcaca                                                                                        >  2:697078‑M1/115‑150 (MQ=255)                                    gCAGGGTGTCCATGGTCGGCCGTCAGATATGCAAGATGAATTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCcaca                                                                                        >  2:721174/1‑150 (MQ=255)                                               aTGGTCGGCCGTCAGATATGCAAGATGAATTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTg                                                                             >  2:308750/1‑150 (MQ=255)                                                  gTCGGCCGTCAGATATGCAAGATGAATTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAac                                                                          >  1:1187103/1‑150 (MQ=255)                                                  gTCGGCCGTCAGATATGCAAGATGAATTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAac                                                                          <  2:371972/150‑1 (MQ=255)                                                   tCGGCCGTCAGATATGCAAGATGAATTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAaca                                                                         <  1:1035562/150‑1 (MQ=255)                                                     ggacGTCCGATATGCAAAATGAATTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTACAGCGAATCCCCATAAGGCGCGTCTGACTCAGGTGGGGGCGTCCCTACAGCAGCACGCTGAAcacc                                                                       >  2:265165/4‑150 (MQ=255)                                                       ccGTCAGATATGCAAGATGAATTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCGGCACGCTGAAcaccac                                                                     >  1:1005506/1‑150 (MQ=255)                                                          tCAGATATGCAAGATGAATTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAg                                                                                                         <  1:1065472/111‑1 (MQ=255)                                                          tCAGATATGCAAGATGAATTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAg                                                                                                         >  2:1065472/1‑111 (MQ=255)                                                          tCAGATATGCAAGATGAATTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCcaca                                                                                        <  2:454206/128‑1 (MQ=255)                                                          tCAGATATGCAAGATGAATTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCcaca                                                                                        >  1:454206/1‑128 (MQ=255)                                                             gATATGCAAGATGAAGTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAGGc                                                               <  2:354663/150‑1 (MQ=255)                                                                  tgttcctcgacaacctgttcgcccagcacctggcgcacaagaccttgctggcctgtgtcgcctgggtggtgttcagcgtgctgcTGTGGCCCCGCCAACCCAGGCGGGTGCGGccc                                                                                            <  1:1183953‑M1/32‑1 (MQ=255)                                                                  tgttcctcgacaacctgttcgcccagcacctggcgcacaagaccttgctggcctgtgtcgcctgggtggtgttcagcgtgctgcTGTGGCCCCGCCAACCCAGGCGGGTGCGGccc                                                                                            >  2:1183953‑M1/85‑116 (MQ=255)                                                                           aTTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAGGCGACACAGGCCAGCa                                                 >  2:243822/1‑150 (MQ=255)                                                                            ttCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAGGCGACACAGGCCAGCaa                                                >  2:322045/1‑150 (MQ=255)                                                                               gcgAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAGGCGACACAGGCCAGCAAGGt                                             >  2:266807/1‑150 (MQ=255)                                                                                 gAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAGGCGACACAGGCCAGCAAGGTCt                                           >  1:369372/1‑150 (MQ=255)                                                                                  aaCCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCGGCACGCTGAACACCACCCAGGCGACACAGGCCAGCAAGGTCtt                                          <  2:1005506/150‑1 (MQ=255)                                                                                   aCCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAGGCGACACAGGCCAGCAAGGTCTtg                                         <  1:520405/150‑1 (MQ=255)                                                                                     cAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAGGCGACACAGGCCAGCAAGGTCTtgtg                                       <  2:888088/150‑1 (MQ=255)                                                                                             tgcCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAg                                                                 >  1:705780/1‑116 (MQ=255)                                                                                             tgcCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAg                                                                 <  2:705780/116‑1 (MQ=255)                                                                                               ccGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAGGGGACACAGGCCCGCAAGGTCTTGTGGGCGAGATGc                             >  1:552315/1‑150 (MQ=255)                                                                                                 gAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAGGCGACACAGGCCAGCAAGGTCTTGTGCGCCAGGTGCTg                           <  1:308750/150‑1 (MQ=255)                                                                                                                    aggcagAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAGGCGACACAGGCCAGCAAGGTCTTGTGCGCCAGGTGCTGGGCGAACAGGTTGTCGAgg        <  1:721174/150‑1 (MQ=255)                                                                                                                       cagAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAGGCGACACAGGCCAGCAAGGTCTTGTGCGCCAGGTGCTGGGCGAACAGGTTGTCGAGGAAc     <  1:243822/150‑1 (MQ=255)                                                                                                                        agAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAGGCGACACAGGCCAGCAAGGTCTTGTGCGCCAGGTGCTGGGCGAACAGGTTGTCGAGGAAca    >  1:1002658/1‑150 (MQ=255)                                                                                                                            aCCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAGGCGACACAGGCCAGCAAGGTCTTGTGCGCCAGGTGCTGGGCGAACAGGTTGTCGAGGAAcagc  <  2:813005/148‑1 (MQ=255)                                                                                                                            aCCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAGGCGACACAGGCCAGCAAGGTCTTGTGCGCCAGGTGCTGGGCGAACAGGTTGTCGAGGAAcagc  >  1:813005/1‑148 (MQ=255)                                                                                                                                       tCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAGGCGACACAGGCCAGCAAGGTCTTGTGCGCCAGGt                               >  1:964393/1‑108 (MQ=255)                                                                                                                                       tCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAGGCGACACAGGCCAGCAAGGTCTTGTGCGCCAGGt                               <  2:964393/108‑1 (MQ=255)                                                                                                                                                      |                                                                                                                          GGCCAGTGCCAGAGTGCCGAATAGCGGTGCGTACGGCAGGGTGTCCATGGTCGGCCGTCAGATATGCAAGATGAATTCGCGAACCAGCTTGCTGCCGAAATAGGCCAGCATCAGCAGGCAGAAACCGCTCAGCGTCCAGCGGATGGCCATGTGGCCCCGCCAACCCAGGCGGGTGCGGCCCCACAGCAGCACGCTGAACACCACCCAGGCGACACAGGCCAGCAAGGTCTTGTGCGCCAGGTGCTGGGCGAACAGGTTGTCGAGGAACAGC  >  NC_002947/1665862‑1666132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.