New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2303174	35 (0.780)	3 (0.070)	3/224	NT	8.9%	intergenic (‑216/+79)	PP_mr30/PP_2027	C4 ncRNA/hypothetical protein
	?	NC_002947	= 2303208	30 (0.740)					intergenic (‑250/+45)	PP_mr30/PP_2027	C4 ncRNA/hypothetical protein

CGTGAGGTGTTTCCCCGACAACAGCGATAGTTCGGCAGCGCGCGTAGGGTAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCG  >  NC_002947/2303027‑2303320                                                                                                                                                    |                                                                                                                                                   cGTGAGGTGTGGCCCCGACAACAGCGATAGTTCGGCAGCGCGCGTAGGGTAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACtg                                                                                                                                                  >  2:322966‑M1/1‑148 (MQ=255)       gtgtTTCCCCGACAACAGCGATAGTTCGGCAGCGCGCGTAGGGTAATTCCGAAGCGGGTTGCTTCTGAAGCGTTGGGGTGCAGGTTAAGAAATATCTTACGGTAGTAGCTGAGCGGGTTTTCGGGGGCGCGCGCGCTCCCCTGGGTACgg                                                                                                                                            >  2:1089532/1‑150 (MQ=255)        tgtTTCCCCGACAACAGCGATAGTTCGGCAGCGCGCGTAGGGTAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGgc                                                                                                                                           <  2:1086234/150‑1 (MQ=255)              cccGACAACAGCGATAGTTCGGCAGCGCGCGTAGGGTAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAgg                                                                                                                                     <  2:238719/150‑1 (MQ=255)               ccGACAACAGCGATAGTTCGGCAGCGCGCGTAGGGTAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGt                                                                                                                                    >  1:933236/1‑150 (MQ=255)               ccGACAACAGCGATAGTTCGGCAGCGCGCGTAGGGTAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGt                                                                                                                                    >  2:315572/1‑150 (MQ=255)                  acaacaGCGATAGTTCGGCAGCGCGCGTAGGGTAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTtct                                                                                                                                 <  1:107610/150‑1 (MQ=255)                      caGCGATAGTTCGGCAGCGCGCGTAGGGTAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGc                                                                                                                             <  1:809031/150‑1 (MQ=255)                       aGCGATAGTTCGGCAGCGCGCGTAGGGTAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCg                                                                                                                            >  2:341434/1‑150 (MQ=255)                              gTTCGGCAGCGCGCGTAGGGTAATTCCTAAGCGGGTTGCTTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAAGTAAGGGGCAAGGTTCTCGGCGTACGCgg                                                                                                                     >  2:42776/1‑150 (MQ=255)                              gTTCGGCAGCGCGCGTAGGGTAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCgg                                                                                                                     >  2:293059/1‑150 (MQ=255)                                 tggCACCTCGCGTAGGGTAATTCCTAAGGGGGGTGATTCTGAAGCATTTGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGATGCGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCa                                                                                                                  <  2:187524/149‑1 (MQ=255)                                      gcgcgcGTAGGGTAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAgtggg                                                                                                             <  1:564544‑M2/150‑6 (MQ=255)                                          gcgTAGGGTAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAgtgggagcg                                                                                                         >  1:42776‑M2/1‑141 (MQ=255)                                           cgTAGGGTAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAgtgggagcgg                                                                                                        >  1:57434‑M2/1‑140 (MQ=255)                                                ggTAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACg                                                                                                                                             >  2:688974/1‑108 (MQ=255)                                                ggTAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACg                                                                                                                                             <  1:688974/108‑1 (MQ=255)                                                 gTAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACtgaccgcgtacgccgagaaccttgcgccgtacctgtgggagcgg                                                                                                        >  2:759545‑M1/1‑100 (MQ=255)                                                 gTAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACtgaccgcgtacgccgagaaccttgcgccgtacctgtgggagcgg                                                                                                        <  1:759545‑M1/144‑45 (MQ=255)                                                         tAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAag                                                                                          >  1:439160/1‑150 (MQ=255)                                                             cGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACtgaccgcgtacgccgagaaccttgcgccgtacctgtgggagcgggcgtgcccgcgaacaccg                                                                                      <  1:322966‑M1/150‑63 (MQ=255)                                                               ggtgaagtCTGAAGCATTGTGTTGCAGTTTCCGAAATCTCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCTACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGCCAGTGGGAGCGGGCATGCCCGCGAAGAGGccc                                                                                    <  1:1089532/143‑1 (MQ=255)                                                                     ttCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAg                                                                              >  2:204856/1‑150 (MQ=255)                                                                      tCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAATAGGCCCGCACAgg                                                                             <  1:848379/150‑1 (MQ=255)                                                                          aaGCATTGGGTTGCAGGTTCGGACATCTCTTCCGGTGCTATGTCCAGCGCGGATCCCGGGCACGCCCTCGCCCACAGGTACGGCGCAAGGTTCGCGGCGTACGCCGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAAc                                                                         <  2:564544/150‑1 (MQ=25)                                                                            gCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCa                                                                       <  1:341434/150‑1 (MQ=255)                                                                              aTTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGtt                                                                                                                                   >  1:1141188/1‑88 (MQ=255)                                                                              aTTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGtt                                                                                                                                   <  2:1141188/88‑1 (MQ=255)                                                                               ttGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCactt                                                                    >  1:414236/1‑150 (MQ=255)                                                                                  ggTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCacttact                                                                 <  1:315572/150‑1 (MQ=255)                                                                                   gTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCacttactt                                                                >  1:263925/1‑150 (MQ=255)                                                                                   gTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCacttactt                                                                >  2:310382/1‑150 (MQ=255)                                                                                    ttGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTg                                                               <  2:414236/150‑1 (MQ=255)                                                                                     tGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTgg                                                              <  1:204856/150‑1 (MQ=255)                                                                                          gTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATag                                                         >  2:835736/1‑150 (MQ=255)                                                                                          gTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATag                                                         >  1:477641/1‑150 (MQ=255)                                                                                          gTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATag                                                         >  1:464319/1‑150 (MQ=255)                                                                                           ttCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCACCGAGGTACGGCGCAAGGGTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATaga                                                        >  1:750305/1‑150 (MQ=255)                                                                                                               gtAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCAAGTAGGCTCGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTtc                                    <  1:665522/150‑1 (MQ=39)                                                                                                                         cGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAgtgggagcgggcgtgcccgcgaacaccggcgcagctaccaccgtaagatatttctgaacctgcaacccaatgcttcagaatcaacccg                          <  1:322966‑M2/150‑89 (MQ=255)                                                                                                                                      cACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTg             <  2:750305/150‑1 (MQ=255)                                                                                                                                           ccGCTCCCACtgaccgcgtacgccgagaaccttgcgccgtacctgtgggagcgggcgtgcccgcgaacaccggcgcagctaccaccgtaagatatttctgaacctgcaacccaatgcttcagaatcaacccgcttaggaattaccctacg        >  1:57434‑M1/1‑10 (MQ=255)                                                                                                                                           ccGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAgtgggagcgggcgtgcccgcgaacaccggcgcagctaccaccgtaagatatttctgaacctgcaacccaatgcttcagaatcaacccgcttaggaattac              <  1:759545‑M2/144‑101 (MQ=255)                                                                                                                                           ccGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAgtgggagcgggcgtgcccgcgaacaccggcgcagctaccaccgtaagatatttctgaacctgcaacccaatgcttcagaatcaacccgcttaggaattac              >  2:759545‑M2/1‑44 (MQ=255)                                                                                                                                           ccGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTcgcccgcc                           <  2:1117903/131‑1 (MQ=255)                                                                                                                                           ccGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTcgcccgcc                           >  1:1117903/1‑131 (MQ=255)                                                                                                                                            cGCTCCCACtgaccgcgtacgccgagaaccttgcgccgtacctgtgggagcgggcgtgcccgcgaacaccggcgcagctaccaccgtaagatatttctgaacctgcaacccaatgcttcagaatcaacccgcttaggaattaccctacgc       >  1:42776‑M1/1‑9 (MQ=255)                                                                                                                                                cccACtgaccgcgtacgccgagaaccttgcgccgtacctgtgggagcgggcgtgcccgcgaacaccggcgcagctaccaccgtaagatatttctgaacctgcaacccaatgcttcagaatcaacccgcttaggaattaccctacgcgcgc   <  1:564544‑M1/150‑146 (MQ=255)                                                                                                                                                 ccACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCg  >  1:373304/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CGTGAGGTGTTTCCCCGACAACAGCGATAGTTCGGCAGCGCGCGTAGGGTAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTACGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCG  >  NC_002947/2303027‑2303320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.