New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2635890 =	38 (0.840)	6 (0.140)	6/242	NT	14.4%	coding (727/1047 nt)	PP_2305	hypothetical protein
	?	NC_002947	2635921 =	34 (0.770)					coding (696/1047 nt)	PP_2305	hypothetical protein

ATGACCTCGAAGCTCTGGTTGATCAAATCCAGCAGCGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCTTGAA  >  NC_002947/2635742‑2636022                                                                                                                                                     |                                                                                                                                      caaccagaagcagtaccagttgccggtgatcgagcgcccggcggcgttcaagatgcgctttgacgccttgttgagctcgctgggttcacgtttgccattccgacgcaaaccggcggaagagctgatccgcatcgaaaaggaaatcgtcGc                                                                                                                                      <  2:966601‑M1/2‑1 (MQ=255)  tGACCTCGAAGCTCTGGTTGATCAAATCCAGCAGCGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGcc                                                                                                                                     >  1:846199/1‑150 (MQ=255)  aaccagaagcagtaccagttgccggtgatcgagcgccctgcggcgttcaagaggggctttgacgcctttttgagctcgctgcgtcccctttttctattccgacgcaaaccggcggaagagctgatccgcatcgaaaaggaaatcgtcGcc                                                                                                                                     <  1:1177610‑M1/3‑1 (MQ=255)  aaccagaagcagtaccagttgccggtgatcgagcgcccggcggcgttcaagatgcgctttgacgccttgttgagctcgctgggttcacgtttgccattccgacgcaaaccggcggaagagctgatccgcatcgaaaaggaaatcgtcGcc                                                                                                                                     <  1:966599‑M1/3‑1 (MQ=255)      cTCGAAGCTCTGGTTGATCAAATCCAGCAGCGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACgg                                                                                                                                 >  2:305740/1‑150 (MQ=255)                tGGTTGATCAAATCCAGCAGCGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGt                                                                                                                       <  2:13037/150‑1 (MQ=255)                tGGTTGATCAAATCCAGCAGCGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGt                                                                                                                       >  1:989076/1‑150 (MQ=255)                  gTTGATCAAATCCAGCAGCGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGc                                                                                                                     >  2:1028618/1‑150 (MQ=255)                  gTTGATCAAATCCAGCAGCGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGc                                                                                                                     <  1:1137500/150‑1 (MQ=255)                     gATCAAATCCAGCAGCGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCaa                                                                                                                  >  1:91811/1‑150 (MQ=255)                       tCAAATCCAGCAGCGAGGCTGGCCCCACGTTGTCGGTGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGc                                                                                                                                      >  2:938987/1‑128 (MQ=255)                       tCAAATCCAGCAGCGAGGCTGGCCCCACGTTGTCGGTGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTAGCTTTCCGGGTCGGCGCTGTCGGCAAGc                                                                                                                                      <  1:938987/128‑1 (MQ=255)                       tCAAATCCAGCAGCGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAAcc                                                                                                                >  1:331448/1‑150 (MQ=255)                         aaaTCCAGCAGCGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAAcccc                                                                                                              >  2:970952/1‑150 (MQ=255)                         aaaTCCAGCAGCGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAAcccc                                                                                                              >  2:1052765/1‑150 (MQ=255)                          aaTCCAGCAGCGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCt                                                                                                             >  2:22932/1‑150 (MQ=255)                                 cagcGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGcgac                                                                                                      >  1:903831/1‑150 (MQ=255)                                 cagcGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGcgac                                                                                                      <  1:1015804/150‑1 (MQ=255)                                      ccggcggcgttcaagatgcgctttgacgccttgttgagctcgctgggttcacgtttgccattccgacgcaaaccggcggaagagctgatccgcatcgaaaaggaaatcgtcg                                                                                                                                       >  2:424726‑M1/112‑112 (MQ=255)                                      ccggcggcgttcaagatgcgctttgacgccttgttgagctcgctgggttcacgtttgccattccgacgcaaaccggcggaagagctgatccgcatcgaaaaggaaatcgtcg                                                                                                                                       <  1:424726‑M1/1‑1 (MQ=255)                                          tGGCCCCACGTTGTCGAAGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCAGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCtt                                                                                             >  1:441396/1‑150 (MQ=255)                                                          atgatgAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGc                                                                            <  1:22932/150‑1 (MQ=255)                                                                  ccttgttgagctcgctgggttcacgtttgccattccgacgcaaaccggcggaagagctgatccgcatcgaaaaggaaatcgtcGCCGAGGGCTTGGCGGTGCCAACCCCTc                                                                                                            >  2:340822‑M1/84‑111 (MQ=255)                                                                  ccttgttgagctcgctgggttcacgtttgccattccgacgcaaaccggcggaagagctgatccgcatcgaaaaggaaatcgtcGCCGAGGGCTTGGCGGTGCCAACCCCTc                                                                                                            <  1:340822‑M1/28‑1 (MQ=255)                                                                     gCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCgg                                                                 <  2:331448/150‑1 (MQ=255)                                                                       cGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGTCAAGCCACGGGCTTGGCGGT‑CCGCCCCACTATCATCAAGGTGCTTGGTCGATGCGGATCAGCTCTTCCGCCGGtt                                                               >  1:570153/1‑150 (MQ=255)                                                                       cGGTGGCCGACTTCGGCGCGCCCTCGCCCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGtt                                                               <  1:305740/150‑1 (MQ=255)                                                                               gACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCgg                                                       >  1:982400/1‑150 (MQ=255)                                                                                aCTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCggg                                                      >  2:1026929/1‑149 (MQ=255)                                                                                  ttCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAAt                                                    <  2:903831/150‑1 (MQ=255)                                                                                   ggttcacgtttgccattccgacgcaaaccggcggaagagctgatccgcatcgaaaaggaaatcgtcGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTc                                                                                                >  1:418966‑M1/67‑106 (MQ=255)                                                                                   ggttcacgtttgccattccgacgcaaaccggcggaagagctgatccgcatcgaaaaggaaatcgtcGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTc                                                                                                <  2:418966‑M1/40‑1 (MQ=255)                                                                                    cGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATgg                                                  >  2:902518/1‑150 (MQ=255)                                                                                     ggCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGc                                                 >  2:403754/1‑150 (MQ=255)                                                                                              tCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGaa                                        <  1:112116/150‑1 (MQ=255)                                                                                                cattccgacgcaaaccggcggaagagctgatccgcatcgaaaaggaaatcgtcGCCACGGGCTTGGCGGTGCCAACCCCTCgg                                                                                                          <  1:411776‑M1/30‑1 (MQ=255)                                                                                                cattccgacgcaaaccggcggaagagctgatccgcatcgaaaaggaaatcgtcGCCACGGGCTTGGCGGTGCCAACCCCTCgg                                                                                                          >  2:411776‑M1/54‑83 (MQ=255)                                                                                                    tCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATTCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGc                                  >  2:1177610/1‑150 (MQ=255)                                                                                                    tCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGc                                  >  2:295572/1‑150 (MQ=255)                                                                                                            cGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTcaa                          <  1:902518/150‑1 (MQ=255)                                                                                                               tGCCGGTTGCTGGCTTTCCAGGTCGGCCCTGTCGGCAAGCCACGGGCTTCGCGGTGCCAACCCCTCGCCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTcaacaa                       <  1:664962/150‑1 (MQ=255)                                                                                                                  cGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGc                    <  2:989076/150‑1 (MQ=255)                                                                                                                        cTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCaaa              >  1:610423/1‑150 (MQ=255)                                                                                                                         tGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAg             >  2:297824/1‑150 (MQ=255)                                                                                                                         tGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAg             >  2:147582/1‑150 (MQ=255)                                                                                                                           gCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGC‑TCAAAgcgc          <  2:441396/150‑1 (MQ=255)                                                                                                                            cTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAgcgc          <  1:1026929/150‑1 (MQ=255)                                                                                                                               tCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATc       <  1:970952/150‑1 (MQ=255)                                                                                                                               tCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATc       <  1:297824/150‑1 (MQ=255)                                                                                                                                 cGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCtt     <  2:91811/150‑1 (MQ=255)                                                                                                                                  gggTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCTTg    >  1:966601/1‑150 (MQ=255)                                                                                                                                    gTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCTTGaa  <  2:982400/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                      ATGACCTCGAAGCTCTGGTTGATCAAATCCAGCAGCGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCTTGAA  >  NC_002947/2635742‑2636022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.