New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2635890 =	38 (0.840)	6 (0.140)	6/242	NT	14.4%	coding (727/1047 nt)	PP_2305	hypothetical protein
	?	NC_002947	2635921 =	34 (0.770)					coding (696/1047 nt)	PP_2305	hypothetical protein

CAGCGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCTTGAACGCCGCCGGGCGCTCGATCACCGGCAACTGGTACTGCTTCTGGTTG  >  NC_002947/2635774‑2636068                                                                                                                                                    |                                                                                                                                                     cagcGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGcgac                                                                                                                                                    <  1:1015804/150‑1 (MQ=255) cagcGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGcgac                                                                                                                                                    >  1:903831/1‑150 (MQ=255)          tGGCCCCACGTTGTCGAAGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCAGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCtt                                                                                                                                           >  1:441396/1‑150 (MQ=255)                          atgatgAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGc                                                                                                                          <  1:22932/150‑1 (MQ=255)                                     gCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCgg                                                                                                               <  2:331448/150‑1 (MQ=255)                                       cGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGTCAAGCCACGGGCTTGGCGGT‑CCGCCCCACTATCATCAAGGTGCTTGGTCGATGCGGATCAGCTCTTCCGCCGGtt                                                                                                             >  1:570153/1‑150 (MQ=255)                                       cGGTGGCCGACTTCGGCGCGCCCTCGCCCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGtt                                                                                                             <  1:305740/150‑1 (MQ=255)                                               gACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCgg                                                                                                     >  1:982400/1‑150 (MQ=255)                                                aCTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCggg                                                                                                    >  2:1026929/1‑149 (MQ=255)                                                  ttCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAAt                                                                                                  <  2:903831/150‑1 (MQ=255)                                                   ggttcacgtttgccattccgacgcaaaccggcggaagagctgatccgcatcgaaaaggaaatcgtcGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTc                                                                                                                                              <  2:418966‑M1/40‑1 (MQ=255)                                                   ggttcacgtttgccattccgacgcaaaccggcggaagagctgatccgcatcgaaaaggaaatcgtcGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTc                                                                                                                                              >  1:418966‑M1/67‑106 (MQ=255)                                                    cGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATgg                                                                                                >  2:902518/1‑150 (MQ=255)                                                     ggCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGc                                                                                               >  2:403754/1‑150 (MQ=255)                                                              tCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGaa                                                                                      <  1:112116/150‑1 (MQ=255)                                                                    tCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATTCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGc                                                                                >  2:1177610/1‑150 (MQ=255)                                                                    tCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGc                                                                                >  2:295572/1‑150 (MQ=255)                                                                            cGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTcaa                                                                        <  1:902518/150‑1 (MQ=255)                                                                               tGCCGGTTGCTGGCTTTCCAGGTCGGCCCTGTCGGCAAGCCACGGGCTTCGCGGTGCCAACCCCTCGCCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTcaacaa                                                                     <  1:664962/150‑1 (MQ=255)                                                                                  cGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGc                                                                  <  2:989076/150‑1 (MQ=255)                                                                                        cTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCaaa                                                            >  1:610423/1‑150 (MQ=255)                                                                                         tGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAg                                                           >  2:297824/1‑150 (MQ=255)                                                                                         tGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAg                                                           >  2:147582/1‑150 (MQ=255)                                                                                           gCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGC‑TCAAAgcgc                                                        <  2:441396/150‑1 (MQ=255)                                                                                            cTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAgcgc                                                        <  1:1026929/150‑1 (MQ=255)                                                                                               tCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATc                                                     <  1:970952/150‑1 (MQ=255)                                                                                               tCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATc                                                     <  1:297824/150‑1 (MQ=255)                                                                                                 cGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCtt                                                   <  2:91811/150‑1 (MQ=255)                                                                                                  gggTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCTTg                                                  >  1:966601/1‑150 (MQ=255)                                                                                                    gTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCTTGaa                                                <  2:982400/150‑1 (MQ=255)                                                                                                            gaaatcgtcgccgaggggttggcaccgccaagcccgtggcGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAAcc                                                                                    >  1:418966‑M2/41‑106 (MQ=255)                                                                                                            gaaatcgtcgccgaggggttggcaccgccaagcccgtggcGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAAcc                                                                                    <  2:418966‑M2/66‑1 (MQ=255)                                                                                                                      ccgaggggttggcaccgccaagcccgtggcGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATg                                                                                                 <  1:411776‑M2/53‑1 (MQ=255)                                                                                                                      ccgaggggttggcaccgccaagcccgtggcGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATg                                                                                                 >  2:411776‑M2/31‑83 (MQ=255)                                                                                                                        gaggggttggcaccgccaagccctcggcGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAgg                                                                   >  2:340822‑M2/29‑111 (MQ=255)                                                                                                                        gaggggttggcaccgccaagccctcggcGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAgg                                                                   <  1:340822‑M2/83‑1 (MQ=255)                                                                                                                        aCGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGaa                                                                                                   >  1:8205/1‑79 (MQ=255)                                                                                                                        aCGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGaa                                                                                                   <  2:8205/79‑1 (MQ=255)                                                                                                                        aCGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCTTGAACGCCGCCGGGCGCTCGATCa                            >  2:244884/1‑150 (MQ=255)                                                                                                                          gggCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCTTGAACGCCGCCGGGCGCTCGATCAcc                          <  1:1028618/150‑1 (MQ=255)                                                                                                                           ggCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCTTGAACGCCGCCGGGCGCTCGATCACCg                         <  2:846199/150‑1 (MQ=255)                                                                                                                              ttGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATc                                                     >  2:933681/1‑119 (MQ=255)                                                                                                                              ttGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATc                                                     <  1:933681/119‑1 (MQ=255)                                                                                                                                     tGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCTTGAACGCCGCCGGGCGCTCGATCACCGGCAACTGGTa               <  1:295572/150‑1 (MQ=255)                                                                                                                                             ccTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCTTGAACGCCGCCGGGCGCTCGATCACCGGCAACTGGTACTGCTTCt       <  1:1190112/150‑1 (MQ=255)                                                                                                                                                 ggcGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCTTGAACGCCGCCGGGCGCTCGATCACCGGCAACTGGTACTGCTTCtggtt   <  1:966599‑M2/147‑1 (MQ=255)                                                                                                                                                 ggcGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATAGAAAAAGGGGACGCAGCGAGCTCAAAAAGGCGTCAAAGCCCCTCTTGAACGCCGCAGGGCGCTCGATCACCGGCAACTGGTACTGCTTCtggtt   <  1:1177610‑M2/147‑1 (MQ=255)                                                                                                                                                  gcGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCTTGAACGCCGCCGGGCGCTCGATCACCGGCAACTGGTACTGCTTCtggttg  <  2:966601‑M2/148‑1 (MQ=255)                                                                                                                                                   cGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCTTGAACGCCGCCgg                                       >  2:424726‑M2/2‑112 (MQ=255)                                                                                                                                                   cGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCTTGAACGCCGCCgg                                       <  1:424726‑M2/111‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CAGCGAGGCTGGCCCCACGTTGTCGATGATGAAAGAGCCGGTGGCCGACTTCGGCGCGCCCTCGCGCTCCGGGGCCGCTGCCGGTTGCTGGCTTTCCGGGTCGGCGCTGTCGGCAAGCCACGGGCTTGGCGGTGCCAACCCCTCGGCGACGATTTCCTT‑TTCGATGCGGATCAGCTCTTCCGCCGGTTTGCGTCGGAATGGCAAACGTGAACCCAGCGAGCTCAACAAGGCGTCAAAGCGCATCTTGAACGCCGCCGGGCGCTCGATCACCGGCAACTGGTACTGCTTCTGGTTG  >  NC_002947/2635774‑2636068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.