| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2773568 | 40 (0.890) | 3 (0.070) | 3/226 | NT | 7.0% | coding (529/1053 nt) | calA | coniferyl alcohol dehydrogenase |
| ? | NC_002947 | = 2773594 | 43 (1.050) | coding (555/1053 nt) | calA | coniferyl alcohol dehydrogenase | |||||
CATGGGCGGGTACTCCAGCAGCATCGTGGTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCATGTGATCGTCTCC > NC_002947/2773420‑2773717 | cATGGGCGGGTACTCCAGCAGCATCGTGGTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCT‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCca < 1:1155644/150‑1 (MQ=255)cATGGGCGGGTACTCCAGCAGCATCGTGGTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCca > 2:1034507/1‑150 (MQ=255) cagcagCATCGTGGTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCt > 1:956367/1‑150 (MQ=255) caTCGTGGTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCAt < 2:993078/150‑1 (MQ=255) cGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGc > 2:1134502/1‑127 (MQ=255) cGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGc < 1:1134502/127‑1 (MQ=255) ttCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCTCGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCgcccatgccgaggatgccgatcttgtggcctgg < 1:75156‑M1/142‑34 (MQ=255) ttCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCgcccatgccgaggatgccgatcttgtggcctgg > 2:75156‑M1/1‑109 (MQ=255) tCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATgg < 2:747194/150‑1 (MQ=255) gtggtgCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGc < 2:878237/150‑1 (MQ=255) gtggtgCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGc < 1:700848/150‑1 (MQ=255) tggtgCGCATACCGGCCGGCATGGCCTTGCCCTGCGCTTCACCTATTCTGTGTGCCGGCTTC‑GCACCACGCCGTCCGCTCAAGCACCACGGCGTTGGCCCAGGCCgcccatgccgaggatgccgatcttgtggcctgggccaacgccgtg < 1:327755‑M1/150‑46 (MQ=255) cggccggcATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCgg > 2:488064‑M2/1‑119 (MQ=255) cggccggcATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCgg < 1:488064‑M2/121‑3 (MQ=255) ccAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAg > 1:252077/1‑150 (MQ=255) cAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGggc < 2:379010/100‑1 (MQ=255) cAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGggc > 1:379010/1‑100 (MQ=255) aGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTg > 2:407898/1‑150 (MQ=255) cACCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGt > 2:473366/1‑150 (MQ=255) aCCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCa > 2:23974/1‑86 (MQ=255) aCCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCa < 1:23974/86‑1 (MQ=255) ccTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACAGGTGCATCAAACTGGCCAAGGCCCTGGGTGGGGACGTGGCCGTGttt > 2:499411/1‑150 (MQ=255) tATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTgg < 1:688600/128‑1 (MQ=255) tATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTgg > 2:688600/1‑128 (MQ=255) tgtgtgCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTAc > 2:837198/1‑145 (MQ=255) tgtgtgCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTAc < 1:837198/145‑1 (MQ=255) ccGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCccaag < 1:499411/150‑1 (MQ=255) ccGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCccaag > 1:776224/1‑150 (MQ=255) aTCACCACCCATTCG‑CGGCTCAAGCACCACGGCGCTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCccaagccaag < 2:252077/150‑1 (MQ=255) accaccTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGcc > 1:296894/1‑150 (MQ=255) ccaccTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCg > 2:60158/1‑150 (MQ=255) accTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAg < 1:1024870/150‑1 (MQ=255) ttCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTg < 1:828617/88‑1 (MQ=255) ttCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTg > 2:828617/1‑88 (MQ=255) tCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCAAAGCCAAGGCCGAGGAAGCt < 2:956367/150‑1 (MQ=255) g‑ccgcTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTcg > 2:784491/1‑150 (MQ=255) tCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCgccgcc > 1:1096671/1‑150 (MQ=255) ccaGCACCACGGCGGTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCa < 2:192531/148‑1 (MQ=255) gCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGc < 2:718313/67‑1 (MQ=255) gCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGc > 1:718313/1‑67 (MQ=255) cacGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCggcctgggccaacgccgtggtgcttgagcggacggcgtggtgcgaagccggcacacagaataggtgaagcgcagggcaaggccatgccggccggtatgcgcacca < 1:327755‑M2/150‑106 (MQ=255) cGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGa < 1:473366/150‑1 (MQ=255) cGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGa < 1:407898/150‑1 (MQ=255) ggCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGAc < 2:1004217/150‑1 (MQ=255) gCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGACTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCGGGGGGCCGACCATGTGa < 2:376265/150‑1 (MQ=255) ccAGGCCACAAGATCGGCATCCTCGGCATGGGCggcctgggccaacgccgtggtgcttgagcggcgaataggtggtgatgcgagcacacagaataggtgcagcgctgggcaggtccatgccggccggtatgcgcaccacgaa < 1:75156‑M2/142‑110 (MQ=255) ccAGGCCACAAGATCGGCATCCTCGGCATGGGCggcctgggccaacgccgtggtgcttgagcggcgaataggtggtgatgccggcacacagaataggtgcagcgctgggcaggtccatgccggccggtatgcgcaccacgaa > 2:75156‑M2/1‑33 (MQ=255) ccAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCATGTGAt > 1:786895/1‑149 (MQ=255) ccAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCATGTGAt < 2:786895/149‑1 (MQ=255) ccAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCATGTGATc < 1:784491/150‑1 (MQ=255) ccgcccatgccgaggatgccgatcttgtggcctgggccaacgccgtggtgcttgagcggcgaataggtggtgatgccggcacacagaataggtgcagcgctgggcaggtccatgccggccg > 2:488064‑M1/1‑2 (MQ=255) ccgcccatgccgaggatgccgatcttgtggcctgggccaacgccgtggtgcttgagcggcgaataggtggtgatgccggcacacagaataggtgcagcgctgggcaggtccatgccggccg < 1:488064‑M1/121‑120 (MQ=255) cacaAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCATGTGATCGTCTcc > 2:801903/1‑150 (MQ=255) | CATGGGCGGGTACTCCAGCAGCATCGTGGTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCG‑CCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCATGTGATCGTCTCC > NC_002947/2773420‑2773717 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |