New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2773568	40 (0.890)	3 (0.070)	3/226	NT	7.0%	coding (529/1053 nt)	calA	coniferyl alcohol dehydrogenase
	?	NC_002947	= 2773594	43 (1.050)					coding (555/1053 nt)	calA	coniferyl alcohol dehydrogenase

TCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCATGTGATCGTCTCCACCGATGCCGAGCAGATGCGC  >  NC_002947/2773461‑2773738                                                                                                                                      |                                                                                                                                                 tCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATgg                                                                                                                                  <  2:747194/150‑1 (MQ=255)   gtggtgCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGc                                                                                                                                <  2:878237/150‑1 (MQ=255)   gtggtgCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGc                                                                                                                                <  1:700848/150‑1 (MQ=255)                cggccggcATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCgg                                                                                                                                                <  1:488064‑M2/121‑3 (MQ=255)                cggccggcATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCgg                                                                                                                                                >  2:488064‑M2/1‑119 (MQ=255)                                  ccAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAg                                                                                                 >  1:252077/1‑150 (MQ=255)                                   cAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGggc                                                                                                                                                  >  1:379010/1‑100 (MQ=255)                                   cAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGggc                                                                                                                                                  <  2:379010/100‑1 (MQ=255)                                    aGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTg                                                                                               >  2:407898/1‑150 (MQ=255)                                           cACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGt                                                                                        >  2:473366/1‑150 (MQ=255)                                             ccTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACAGGTGCATCAAACTGGCCAAGGCCCTGGGTGGGGACGTGGCCGTGttt                                                                                      >  2:499411/1‑150 (MQ=255)                                               tATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTgg                                                                                                          <  1:688600/128‑1 (MQ=255)                                               tATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTgg                                                                                                          >  2:688600/1‑128 (MQ=255)                                                    tgtgtgCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTAc                                                                                    >  2:837198/1‑145 (MQ=255)                                                    tgtgtgCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTAc                                                                                    <  1:837198/145‑1 (MQ=255)                                                          ccGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCccaag                                                                         <  1:499411/150‑1 (MQ=255)                                                          ccGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCccaag                                                                         >  1:776224/1‑150 (MQ=255)                                                               aTCACCACCCATTCGCGGCTCAAGCACCACGGCGCTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCccaagccaag                                                                    <  2:252077/150‑1 (MQ=255)                                                                  accaccTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGcc                                                                 >  1:296894/1‑150 (MQ=255)                                                                   ccaccTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCg                                                                >  2:60158/1‑150 (MQ=255)                                                                     accTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAg                                                              <  1:1024870/150‑1 (MQ=255)                                                                          ttCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTg                                                                                                                       >  2:828617/1‑88 (MQ=255)                                                                          ttCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTg                                                                                                                       <  1:828617/88‑1 (MQ=255)                                                                           tCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCAAAGCCAAGGCCGAGGAAGCt                                                        <  2:956367/150‑1 (MQ=255)                                                                             gccgcTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTcg                                                      >  2:784491/1‑150 (MQ=255)                                                                                  tCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCgccgcc                                                 >  1:1096671/1‑150 (MQ=255)                                                                                   ccaGCACCACGGCGGTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCa                                                <  2:192531/148‑1 (MQ=255)                                                                                      gCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGc                                                                                                                                <  2:718313/67‑1 (MQ=255)                                                                                      gCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGc                                                                                                                                >  1:718313/1‑67 (MQ=255)                                                                                          cacGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCggcctgggccaacgccgtggtgcttgagcggacggcgtggtgcgaagccggcacacagaataggtgaagcgcagggcaaggccatgccggccggtatgcgcacca                                         <  1:327755‑M2/150‑106 (MQ=255)                                                                                            cGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGa                                       <  1:407898/150‑1 (MQ=255)                                                                                            cGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGa                                       <  1:473366/150‑1 (MQ=255)                                                                                             ggCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGAc                                      <  2:1004217/150‑1 (MQ=255)                                                                                                    gCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGACTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCGGGGGGCCGACCATGTGa                               <  2:376265/150‑1 (MQ=255)                                                                                                      ccAGGCCACAAGATCGGCATCCTCGGCATGGGCggcctgggccaacgccgtggtgcttgagcggcgaataggtggtgatgcgagcacacagaataggtgcagcgctgggcaggtccatgccggccggtatgcgcaccacgaa                                     <  1:75156‑M2/142‑110 (MQ=255)                                                                                                      ccAGGCCACAAGATCGGCATCCTCGGCATGGGCggcctgggccaacgccgtggtgcttgagcggcgaataggtggtgatgccggcacacagaataggtgcagcgctgggcaggtccatgccggccggtatgcgcaccacgaa                                     >  2:75156‑M2/1‑33 (MQ=255)                                                                                                      ccAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCATGTGAt                              <  2:786895/149‑1 (MQ=255)                                                                                                      ccAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCATGTGAt                              >  1:786895/1‑149 (MQ=255)                                                                                                      ccAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCATGTGATc                             <  1:784491/150‑1 (MQ=255)                                                                                                            cacaAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCATGTGATCGTCTcc                       >  2:801903/1‑150 (MQ=255)                                                                                                              caAGCTCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTCGCCAAGGCCCTGGGTGCGGAAGAGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCCCGCCGCCAGGGGGCCGACCATGTGATCGTCTCCAc                     <  2:339324/150‑1 (MQ=255)                                                                                                              caAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCATGTGATCGTCTCCAc                     <  1:801903/150‑1 (MQ=255)                                                                                                               aaGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTg                                                                                                           >  1:1055376/1‑63 (MQ=255)                                                                                                               aaGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTg                                                                                                           <  2:1055376/63‑1 (MQ=255)                                                                                                                           cTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGAc                                      >  1:882847/1‑120 (MQ=255)                                                                                                                           cTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGAc                                      <  2:882847/120‑1 (MQ=255)                                                                                                                           cTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCAtgtg                                <  1:909322/126‑1 (MQ=255)                                                                                                                           cTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCAtgtg                                >  2:909322/1‑126 (MQ=255)                                                                                                                            tCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGACGAGGAAGCTCACCGCCAGGGGGCCGACCATGTGATAGTCTCCACCGATGCCGGGCAGa       >  2:181546/1‑150 (MQ=255)                                                                                                                                cATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGATCGCCGCCAGGGGGCCGACCATGTGATCGTCTCCACCGATGCCGAGCAGATgcg   >  1:161375/1‑150 (MQ=255)                                                                                                                                 aTGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCATGTGATCGTCTCCACCGATGCCGAGCAGATgcgc  >  2:1014833/1‑150 (MQ=255)                                                                                                                                      |                                                                                                                                                 TCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGCGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCATGTGATCGTCTCCACCGATGCCGAGCAGATGCGC  >  NC_002947/2773461‑2773738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.