New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2808136 =	48 (1.060)	3 (0.070)	3/238	NT	5.9%	coding (94/375 nt)	PP_2462	hypothetical protein
	?	NC_002947	2808160 =	49 (1.130)					coding (118/375 nt)	PP_2462	hypothetical protein

TTGCTTTTCGCCTCGCTGCTGCAGTTCAGGCAGACTTGACCGGTTTTGCAACAAATGATGAGCGGAGCTGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCGACTTTGCCATGGGCAAGCAGGCCAGCGCCGAATTGCTGGAGCA  >  NC_002947/2807989‑2808281                                                                                                                                                    |                                                                                                                                                  ctgcgagccgctggccttgcgtgcctgctccagcaattcggcgctggcctgcttgcccatggcaaagtcggcaccactggcttcgcagcggccatcgttgcctgctgacgcggccggcgcaccaccgccatcagcattgccaccagtgct                                                                                                                                                 >  1:605100‑M1/148‑150 (MQ=255)     ttttCGCCTCGCTGCTGCAGTTCAGGCAGACTTGACAGGTTTTTGGGGGTATGTTGAGCGGAGCTGTCGGAGCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACGTGGCAACTCTGGCTGTGGctgctg                                                                                                                                             >  1:210088/1‑150 (MQ=255)          gCCTCGCTGCTGCAGTTCAGGCAGACTTGACCGGTTTTGCAACAAATGATGAGCGGAGCTGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTg                                                                                                                                        <  1:638443/150‑1 (MQ=255)           ccTCGCTGCTGCAGTTCAGGCAGACTTGACCGGTTTTGCAACAAATGATGAGCGGAGCTGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTgg                                                                                                                                       >  2:341114/1‑150 (MQ=255)              cGCTGCTGCAGTTCAGGCAGACTTGACCGGTTTTGCAACAAATGATGAGCGGAGCTGTCGGATCAGGCAGTTCTCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCgg                                                                                                                                    <  2:496467/150‑1 (MQ=255)                  gcttcAGTTCAGGCAGACTTGACCGGTTTTGCAAAAAATTACGATCTGACCTGTCGGATCAGGCACTTCCCGGACTGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTg                                                                                                                                <  2:210088/150‑1 (MQ=255)                  gctgcAGTTCAGGCAGACTTGACCGGTTTTGCAACAAATGATGAGCGGAGCTGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTg                                                                                                                                <  2:128224/150‑1 (MQ=255)                    tgcAGTTCAGGCAGACTTGACCGGTTTTGCAACAAATGATGAGCGGAGCTGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTgca                                                                                                                              <  2:773525/150‑1 (MQ=255)                                   cTTGACCGGTTTTGCAACAAATGATGAGCGGAGCTGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGATGTGGCTGCTGTCCTGGTGGGTTGCAGCACTGGTGGCAATg                                                                                                               >  1:738390/1‑150 (MQ=255)                                       cggcgctggcctgcttgcccatggcaaagtcggcaccactggcttcgcagcggccatcgttgcccgctgacgcggccggcgcaccaccgccatcagcattgccaccagtGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGa                                                                                                           >  2:118583‑M1/110‑150 (MQ=255)                                       aCCGGTTTTGCAACAAATGATGAGCGGTGCGGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGa                                                                                                           >  1:822500/1‑150 (MQ=255)                                           gTTTTGCAACAAATGATGAGCGGAGCTGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGc                                                                                                       >  1:297142/1‑150 (MQ=255)                                               tGCAACAAATGATGAGCGGAGCTGTCGGATCAGGCAGTTGCCGGACCGATTTAGGAGGCTTCATGTTCTGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCggtg                                                                                                   <  2:504964/150‑1 (MQ=255)                                                   acaaATGATGAGCGGAGCTGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGTGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTgc                                                                                               <  1:71635/150‑1 (MQ=255)                                                    caaATGATGAGCGGAGCTGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCgg                                                                                                     >  2:715145/1‑143 (MQ=255)                                                    caaATGATGAGCGGAGCTGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCgg                                                                                                     <  1:715145/143‑1 (MQ=255)                                                                       tCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCggtg                                                                                                   <  2:996471/126‑1 (MQ=255)                                                                       tCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCggtg                                                                                                   >  1:996471/1‑126 (MQ=255)                                                                               ggCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGc                                                                   >  2:53237/1‑150 (MQ=255)                                                                                gCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGcc                                                                  >  1:1140131/1‑150 (MQ=255)                                                                                        ctgACCTATTTAGGAGGCTTCATGTTCCGTACCAGTCATTCCCTAGCCCATTTGGTTGTGGCTGCTGTCCTGGCGGGTTTCAGCACTGTTGGCAATGCTGATGTCGGTTGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGaa                                                          <  2:738390/148‑1 (MQ=255)                                                                                          gACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGc                                                                                <  1:426610/126‑1 (MQ=255)                                                                                          gACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGc                                                                                >  2:426610/1‑126 (MQ=255)                                                                                          gACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGc                                                        >  1:241785/1‑150 (MQ=255)                                                                                             cGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAg                                                     <  2:822500/150‑1 (MQ=255)                                                                                             cGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAg                                                     >  1:657207/1‑150 (MQ=255)                                                                                                   aggaggCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGc                                               <  2:585913/150‑1 (MQ=255)                                                                                                   aggaggCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGc                                               >  1:585913/1‑150 (MQ=255)                                                                                                    ggaggCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGcc                                              <  2:1087179/150‑1 (MQ=255)                                                                                                     gaggCTTCATGTTCCGTACCCGTGCTTACCTGGCACCTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAgtg                                                   <  2:825136/144‑1 (MQ=255)                                                                                                     gaggCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAgtg                                                   >  1:825136/1‑144 (MQ=255)                                                                                                      aggCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCGa                                            <  2:297142/150‑1 (MQ=255)                                                                                                          ttCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCGACttt                                        <  1:341114/150‑1 (MQ=255)                                                                                                            acgcggccggcgcaccaccgccatcagcattgccaccagtGCTGCTGTCCTGGCGGGTTgcag                                                                                                                             >  2:564235‑M1/41‑63 (MQ=255)                                                                                                            acgcggccggcgcaccaccgccatcagcattgccaccagtGCTGCTGTCCTGGCGGGTTgcag                                                                                                                             <  1:564235‑M1/23‑1 (MQ=255)                                                                                                                 tCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCGACTTTGCCATgg                                 <  1:53237/150‑1 (MQ=255)                                                                                                                    gTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCGACTTTGc                                      >  2:804827/1‑142 (MQ=255)                                                                                                                    gTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCGACTTTGc                                      <  1:804827/142‑1 (MQ=255)                                                                                                                    gTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCGACTTTGCCATGGGCa                              >  1:926405/1‑150 (MQ=255)                                                                                                                        ccGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCggtggt                                                                                                 >  1:873584/1‑79 (MQ=255)                                                                                                                        ccGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCggtggt                                                                                                 <  2:873584/79‑1 (MQ=255)                                                                                                                          gTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCGACTTTGCCATGGGCAAGCAgg                        <  2:1100307/150‑1 (MQ=255)                                                                                                                          gTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCGACTTTGCCATGGGCAAGCAgg                        >  1:1100307/1‑150 (MQ=255)                                                                                                                              ttACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCGACTTTGCCATGGGCAAGCAGGCCAg                    >  1:98351/1‑150 (MQ=255)                                                                                                                                aCCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCGACTTTGCCATGGGCAAGCAGGCCAgcg                  >  2:798791/1‑150 (MQ=255)                                                                                                                                     gCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCGACTTTGCCATGGGCAAGCAGGCCAGCGCCGaa             >  1:960441/1‑150 (MQ=255)                                                                                                                                       aaCTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCGACTTTGCCAGGTGCAAGCAGGCCAGCGCCGAAtt           >  2:281030/1‑150 (MQ=255)                                                                                                                                          tctGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCGACTTTGCCATGGGCAAGCAGGCCAGCGCCGAATTGCt        <  1:476681/150‑1 (MQ=255)                                                                                                                                          tctGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCGACTTTGCCATGGGCAAGCAGGCCAGCGCCGAATTGCt        <  2:1140131/150‑1 (MQ=255)                                                                                                                                          tctGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGATGCCGACTTTGCCATGGGCAAGCAGGCCAGCGCCGAATTGCt        <  1:281030/150‑1 (MQ=255)                                                                                                                                              gctgtggctgCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCgg                                                                              >  2:736977/1‑76 (MQ=255)                                                                                                                                              gctgtggctgCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCgg                                                                              <  1:736977/76‑1 (MQ=255)                                                                                                                                                tgtggctgCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCGACTTTGCCATGGGCAAGCAGGCCAGCGCCGAATTGCTGGAGCa  >  2:663288/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TTGCTTTTCGCCTCGCTGCTGCAGTTCAGGCAGACTTGACCGGTTTTGCAACAAATGATGAGCGGAGCTGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCGACTTTGCCATGGGCAAGCAGGCCAGCGCCGAATTGCTGGAGCA  >  NC_002947/2807989‑2808281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.