New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2808136 =	48 (1.060)	3 (0.070)	3/238	NT	5.9%	coding (94/375 nt)	PP_2462	hypothetical protein
	?	NC_002947	2808160 =	49 (1.130)					coding (118/375 nt)	PP_2462	hypothetical protein

CTTGACCGGTTTTGCAACAAATGATGAGCGGAGCTGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAGGCCAGCGCCGAATTGCTGGAGCAGGCACGCAAGGCCAGCGGCTCGCAG  >  NC_002947/2808023‑2808306                                                                                                                                          |                                                                                                                                                    cTTGACCGGTTTTGCAACAAATGATGAGCGGAGCTGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGATGTGGCTGCTGTCCTGGTGGGTTGCAGCACTGGTGGCAATg                                                                                                                                         >  1:738390/1‑150 (MQ=255)     cggcgctggcctgcttgcccatggcaaagtcggcaccactggcttcgcagcggccatcgttgcccgctgacgcggccggcgcaccaccgccatcagcattgccaccagtGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGa                                                                                                                                     >  2:118583‑M1/110‑150 (MQ=255)     aCCGGTTTTGCAACAAATGATGAGCGGTGCGGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGa                                                                                                                                     >  1:822500/1‑150 (MQ=255)         gTTTTGCAACAAATGATGAGCGGAGCTGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGc                                                                                                                                 >  1:297142/1‑150 (MQ=255)             tGCAACAAATGATGAGCGGAGCTGTCGGATCAGGCAGTTGCCGGACCGATTTAGGAGGCTTCATGTTCTGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCggtg                                                                                                                             <  2:504964/150‑1 (MQ=255)                 acaaATGATGAGCGGAGCTGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGTGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTgc                                                                                                                         <  1:71635/150‑1 (MQ=255)                  caaATGATGAGCGGAGCTGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCgg                                                                                                                               >  2:715145/1‑143 (MQ=255)                  caaATGATGAGCGGAGCTGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCgg                                                                                                                               <  1:715145/143‑1 (MQ=255)                                     tCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCggtg                                                                                                                             >  1:996471/1‑126 (MQ=255)                                     tCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCggtg                                                                                                                             <  2:996471/126‑1 (MQ=255)                                             ggCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGc                                                                                             >  2:53237/1‑150 (MQ=255)                                              gCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGcc                                                                                            >  1:1140131/1‑150 (MQ=255)                                                      ctgACCTATTTAGGAGGCTTCATGTTCCGTACCAGTCATTCCCTAGCCCATTTGGTTGTGGCTGCTGTCCTGGCGGGTTTCAGCACTGTTGGCAATGCTGATGTCGGTTGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGaa                                                                                    <  2:738390/148‑1 (MQ=255)                                                        gACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGc                                                                                                          >  2:426610/1‑126 (MQ=255)                                                        gACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGc                                                                                                          <  1:426610/126‑1 (MQ=255)                                                        gACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGc                                                                                  >  1:241785/1‑150 (MQ=255)                                                           cGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAg                                                                               >  1:657207/1‑150 (MQ=255)                                                           cGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAg                                                                               <  2:822500/150‑1 (MQ=255)                                                                 aggaggCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGc                                                                         >  1:585913/1‑150 (MQ=255)                                                                 aggaggCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGc                                                                         <  2:585913/150‑1 (MQ=255)                                                                  ggaggCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGcc                                                                        <  2:1087179/150‑1 (MQ=255)                                                                   gaggCTTCATGTTCCGTACCCGTGCTTACCTGGCACCTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAgtg                                                                             <  2:825136/144‑1 (MQ=255)                                                                   gaggCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAgtg                                                                             >  1:825136/1‑144 (MQ=255)                                                                    aggCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑a                                                                     <  2:297142/150‑1 (MQ=255)                                                                        ttCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACttt                                                                 <  1:341114/150‑1 (MQ=255)                                                                               tCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATgg                                                          <  1:53237/150‑1 (MQ=255)                                                                                  gTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGc                                                               >  2:804827/1‑142 (MQ=255)                                                                                  gTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGc                                                               <  1:804827/142‑1 (MQ=255)                                                                                  gTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCa                                                       >  1:926405/1‑150 (MQ=255)                                                                                      ccGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCggtggt                                                                                                                           >  1:873584/1‑79 (MQ=255)                                                                                      ccGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCggtggt                                                                                                                           <  2:873584/79‑1 (MQ=255)                                                                                        gTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAgg                                                 >  1:1100307/1‑150 (MQ=255)                                                                                        gTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAgg                                                 <  2:1100307/150‑1 (MQ=255)                                                                                            ttACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAGGCCAg                                             >  1:98351/1‑150 (MQ=255)                                                                                              aCCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAGGCCAgcg                                           >  2:798791/1‑150 (MQ=255)                                                                                                 tcagcattgccaccagtgctgcaacccgccaggacagcagcACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAGGCCAGCGCCg                                        >  2:118583‑M2/42‑150 (MQ=255)                                                                                                   gCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAGGCCAGCGCCGaa                                      >  1:960441/1‑150 (MQ=255)                                                                                                     aaCTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCAGGTGCAAGCAGGCCAGCGCCGAAtt                                    >  2:281030/1‑150 (MQ=255)                                                                                                        tctGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAGGCCAGCGCCGAATTGCt                                 <  1:476681/150‑1 (MQ=255)                                                                                                        tctGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAGGCCAGCGCCGAATTGCt                                 <  2:1140131/150‑1 (MQ=255)                                                                                                        tctGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGATGCCG‑ACTTTGCCATGGGCAAGCAGGCCAGCGCCGAATTGCt                                 <  1:281030/150‑1 (MQ=255)                                                                                                            gctgtggctgCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCgg                                                                                                        >  2:736977/1‑76 (MQ=255)                                                                                                            gctgtggctgCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCgg                                                                                                        <  1:736977/76‑1 (MQ=255)                                                                                                              tgtggctgCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAGGCCAGCGCCGAATTGCTGGAGCa                           >  2:663288/1‑150 (MQ=255)                                                                                                                   ctgcaacccgccaggacagcagcACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGt                                                                                                              <  1:564235‑M2/40‑1 (MQ=255)                                                                                                                   ctgcaacccgccaggacagcagcACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGt                                                                                                              >  2:564235‑M2/24‑63 (MQ=255)                                                                                                                    TGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCAt                                                            >  2:844753‑M1/1‑111 (MQ=255)                                                                                                                    TGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCAt                                                            <  1:844753‑M1/111‑1 (MQ=255)                                                                                                                    TGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAGGCCAGCGCCGAATTGCTGGAGCAGGCACg                     <  2:657940‑M1/150‑1 (MQ=255)                                                                                                                    TGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAGGCCAGCGCCGAATTGCTGGAGCAGGCACg                     <  1:954388‑M1/150‑1 (MQ=255)                                                                                                                        gTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAGGCCAGCGCCGAATTGCTGGAGCAGGCACGCAAg                 <  2:960441/150‑1 (MQ=255)                                                                                                                        gTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAG‑CGCGCCGCATTTGGCCATGGGCAAGCAGGCCAGCGCCGAATTGCTGGAGCAGGCACGCAAg                 <  2:1199455/150‑1 (MQ=255)                                                                                                                            tGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCg                                                                                           <  1:811961/73‑1 (MQ=255)                                                                                                                            tGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCg                                                                                           >  2:811961/1‑73 (MQ=255)                                                                                                                            tGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAGGCCAGCGCCGAAtt                                    <  1:14278/127‑1 (MQ=255)                                                                                                                            tGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAGGCCAGCGCCGAAtt                                    >  2:14278/1‑127 (MQ=255)                                                                                                                             ggCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAGGCCAGCGCCGAATTGCTGGAGCAGGCACGCAAGGCCAg            >  2:379913/1‑150 (MQ=255)                                                                                                                                   ttGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAGGCCAGCGCCGAATTGCTGGAGCAGGCACGCAAGGCCAGCGGCTc      >  1:569144/1‑150 (MQ=255)                                                                                                                                       agcACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCAGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAGGCCAGCGCCGAATTGCTGGAGCAGGCACGCAAGGCCAGCGGCTCGCAg  >  1:605100‑M2/4‑150 (MQ=255)                                                                                                                                          |                                                                                                                                                    CTTGACCGGTTTTGCAACAAATGATGAGCGGAGCTGTCGGATCAGGCAGTTCCCGGACCGATTTAGGAGGCTTCATGTTCCGTACCCGTGCTTACCTGGCAACTCTGGCTGTGGCTGCTGTCCTGGCGGGTTGCAGCACTGGTGGCAATGCTGATGGCGGTGGTGCGCCGGCCGCGTCAGCGGGCAACGATGGCCGCTGCGAAGCCAGTGGTGCCG‑ACTTTGCCATGGGCAAGCAGGCCAGCGCCGAATTGCTGGAGCAGGCACGCAAGGCCAGCGGCTCGCAG  >  NC_002947/2808023‑2808306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.