New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3143903	40 (0.890)	3 (0.070)	3/238	NT	7.4%	coding (784/1539 nt)	rbsA‑II	ribose ABC transporter ‑ ATP‑binding subunit
	?	NC_002947	= 3143917	37 (0.850)					coding (798/1539 nt)	rbsA‑II	ribose ABC transporter ‑ ATP‑binding subunit

GACGGTACTGCGCAACGGTCGCGATGTCGCTGAAGTCTCCCCGCGCAACACGTCGCTGGAGCAGATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGG  >  NC_002947/3143755‑3144050                                                                                                                                                     |                                                                                                                                                    gACGGTACTGCGCAACGGTCGCGATGTCGCTGAAGTCTCCCCGCGCAACACGTCGCTGGAGCAGATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTgcg                                                                                                                                                    >  2:601690/1‑150 (MQ=255)         tGCGCAACGGTCGCGATGTCGCTGAAGTCTCCCCGCGCAACACGTCGCTGGAGCAGATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTgg                                                                                                                                            <  2:1129708/150‑1 (MQ=255)          gcgcAACGGTCGCGATGTCGCTGAAGTCTCCCCGCGCAACACGTCGCTGGAGCAGATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTggg                                                                                                                                           >  2:795260/1‑150 (MQ=255)          gcgcAACGGTCGCGATGTCGCTGAAGTCTCCCCGCGCAACACGTCGCTGGAGCAGATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTggg                                                                                                                                           <  1:1159508/150‑1 (MQ=255)                 ggTCGCGATGTCGCTGAAGTCTCCCCGCGCAACACGTCGCTGGAGCAGATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTgcgc                                                                                                                                                   >  2:166717/1‑135 (MQ=255)                 ggTCGCGATGTCGCTGAAGTCTCCCCGCGCAACACGTCGCTGGAGCAGATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTgcgc                                                                                                                                                   <  1:166717/135‑1 (MQ=255)                     gcgATGTCGCTGAAGTCTCCCCGCGCAACACGTCGCTGGAGCAGATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACggg                                                                                                                                <  2:257655/150‑1 (MQ=255)                        aTGTCGCTGAAGTCTCCCCGCGCAACACGTCGCTGGAGCAGATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCt                                                                                                                             <  1:647140/150‑1 (MQ=255)                            cGCTGAAGTCTCCCCGCGCAACACGTCGCTGGAGCAGATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCa                                                                                                                         <  1:1166707/150‑1 (MQ=255)                            cGCTGAAGTCTCCCCGCGCAACACGTCGCTGGAGCAGATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCa                                                                                                                         <  2:1031532/150‑1 (MQ=255)                                    tctcCCCGCGCAACACGTCGCTGGAGCAGATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATct                                                                                                                 >  1:925968/1‑149 (MQ=255)                                    tctcCCCGCGCAACACGTCGCTGGAGCAGATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCg                                                                                                                 >  2:390405/1‑150 (MQ=255)                                        cccGCGCAACGCGTCGCTGGAGCCGATCCCCCGCCCGACGCTCATCCGATAAGGCGGCGATCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCccgccccagcccgcgcacgtcgagcaacagcgcaccggca                                                                                                             <  2:1103163‑M1/150‑41 (MQ=255)                                          cgcgCAACACGTCGCTGGAGCAGATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCa                                                                                                                         >  1:691689/1‑136 (MQ=255)                                          cgcgCAACACGTCGCTGGAGCAGATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCa                                                                                                                         <  2:691689/136‑1 (MQ=255)                                                             gCAGATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGAt                                                                                        <  1:795260/150‑1 (MQ=255)                                                              cAGATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGAtc                                                                                       <  1:390405/150‑1 (MQ=255)                                                                gATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACgg                                                                                                                                 >  1:558185/1‑106 (MQ=255)                                                                gATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACgg                                                                                                                                 <  2:558185/106‑1 (MQ=255)                                                                  tCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCGGGTGCGCTGTTACTCGCCGTGCGAAGGTCGGGGCAGGCACGGGCCGACCAGGGCATCGACCTGCAGGTGCGCCGAGGCGAGGccgtcg                                                                                   >  2:258119/1‑150 (MQ=255)                                                                       cGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTc                                                                              >  2:1201021/1‑150 (MQ=255)                                                                            gATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCACGGTAGCGGTGCCCGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCgg                                                                         <  1:265242/150‑1 (MQ=255)                                                                             aTGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCggg                                                                        >  2:16208/1‑150 (MQ=255)                                                                                  cAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTCCCAGGGCATCGACCTGCAGGTGCGCCGGGGCGAGATCGTCGGCCTCACCGGGCtggt                                                                   >  1:988477/1‑150 (MQ=255)                                                                                   aaCCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGAGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCtggtg                                                                  >  1:349817/1‑150 (MQ=255)                                                                                    aCCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCtggtgg                                                                 >  1:1081341/1‑150 (MQ=255)                                                                                    aCCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGGGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCtggtgg                                                                 <  2:159232/150‑1 (MQ=255)                                                                                      cgcgAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGc                                                               <  1:29142/150‑1 (MQ=255)                                                                                              cGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGgcgc                                                       <  2:507270/150‑1 (MQ=255)                                                                                               ggCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCccgccccagcccgcgcacgtcga                                                                                                                              >  2:1019492‑M1/1‑55 (MQ=255)                                                                                               ggCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCccgccccagcccgcgcacgtcga                                                                                                                              <  1:1019492‑M1/78‑24 (MQ=255)                                                                                                 cGAGCTGTACCCCAAGGTAGCGGTACCTGCCGGTGCGCTGTTGCTCGGCGTGCGCGGGCTGGGCCGGGCACGGGCCTACCGGGGCATGTAGGTGAAGCTGCGCCGTCGCGGGATCGTCCGCCTCACCCGGCTGATGAGCTCGGACGCCaa                                                    >  2:73848/1‑150 (MQ=255)                                                                                                      tGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAgg                                               >  2:1124500/1‑149 (MQ=255)                                                                                                      tGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCCACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGt                                               <  1:258119/150‑1 (MQ=255)                                                                                                           cccAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGGCTCAcc                                                                           >  1:46459/1‑117 (MQ=255)                                                                                                           cccAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTa                                          >  2:961065/1‑150 (MQ=255)                                                                                                           cccAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGAAGGTGCGCCGTGGCGAGATCGTCGGGCTCAcc                                                                           <  2:46459/117‑1 (MQ=255)                                                                                                            ccAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTg                                                                                               <  2:908105/96‑1 (MQ=255)                                                                                                            ccAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTg                                                                                               >  1:908105/1‑96 (MQ=255)                                                                                                                 gTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGCGACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGc                                    <  1:73848/150‑1 (MQ=255)                                                                                                                      ggTGCCTGCCGGTGCGCTGTTGCTCGACGGGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGtt                               <  2:247529/150‑1 (MQ=255)                                                                                                                          cctgccGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGc                           >  1:196817/1‑150 (MQ=255)                                                                                                                            tgccGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGgcacgtcgagcaacagcgcaccggcaggcaccgctaccttggggtacagatcgccgccttatcggatgagcgtcgggcgggggatcggctccagcgacgcgttgcgcggg                         <  2:1103163‑M2/150‑111 (MQ=255)                                                                                                                            tgccGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCt                         <  2:1177872/150‑1 (MQ=255)                                                                                                                                            cTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGc                                    <  2:778452/123‑1 (MQ=255)                                                                                                                                            cTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGc                                    >  1:778452/1‑123 (MQ=255)                                                                                                                                             tCGACGTGCGCGGGCTGGGGCGGgcacgtcgagcaacagcgcaccggcaggcaccgctaccttggggtacagctcgcc                                                                                <  1:1019492‑M2/78‑56 (MQ=255)                                                                                                                                             tCGACGTGCGCGGGCTGGGGCGGgcacgtcgagcaacagcgcaccggcaggcaccgctaccttggggtacagctcgcc                                                                                >  2:1019492‑M2/1‑23 (MQ=255)                                                                                                                                               gACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAgcggc      <  1:1143999/150‑1 (MQ=255)                                                                                                                                                  gTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAg   <  2:1085071/150‑1 (MQ=255)                                                                                                                                                   tGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCTACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAgg  <  2:925968/150‑1 (MQ=255)                                                                                                                                                     cgcgGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGTCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAgcggc      >  1:217454/1‑144 (MQ=255)                                                                                                                                                     cgcgGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGTCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAgcggc      <  2:217454/144‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GACGGTACTGCGCAACGGTCGCGATGTCGCTGAAGTCTCCCCGCGCAACACGTCGCTGGAGCAGATCACCCGCCTGATGGTCAACCGCGAAGTCGGCGAGCTGTACCCCAAGGTAGCGGTGCCTGCCGGTGCGCTGTTGCTCGACGTGCGCGGGCTGGGGCGGGCACGGGCCTACCAGGGCATCGACCTGCAGGTGCGCCGTGGCGAGATCGTCGGCCTCACCGGGCTGGTGGGCTCGGGCGCCAAGGAGTTGCTACGCAGCCTGTTCGGCCTGGCGCCACCGGACAGCGGCGAGG  >  NC_002947/3143755‑3144050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.