New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3332998	42 (0.930)	3 (0.070)	3/234	NT	6.8%	coding (150/918 nt)	PP_2930	L‑serine dehydratase
	?	NC_002947	= 3333016	42 (0.990)					coding (132/918 nt)	PP_2930	L‑serine dehydratase

GTCTTCCAGGTGCAGCAACTGCTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGTATGAATGTGCAA  >  NC_002947/3332851‑3333141                                                                                                                                                    |                                                                                                                                                  gTCTTCCAGGTGCAGCAACTGCTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCAcgc‑‑gc                                                                                                                                               <  2:1010745/150‑1 (MQ=255)      ccAGGTGCAGCAACTGCTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCgtggt                                                                                                                                          <  2:893463/150‑1 (MQ=255)        aGGTGCAGCAACTGCTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCgt                                                                                                                                             >  2:1165325/1‑145 (MQ=255)        aGGTGCAGCAACTGCTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCgt                                                                                                                                             <  1:1165325/145‑1 (MQ=255)           tGCAGCAACTGCTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTAcc                                                                                                                                     <  2:748187/150‑1 (MQ=255)                caACTGCTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCa                                                                                                                                >  2:872128/1‑150 (MQ=255)                       ttGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTc                                                                                                                                   <  1:1084094/140‑1 (MQ=255)                       ttGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTc                                                                                                                                   >  2:1084094/1‑140 (MQ=255)                       ttGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGgcgtgg                                                                                                                         <  2:1076584‑M2/150‑7 (MQ=255)                          gCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCAACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCt                                                                                                                      >  1:126921/1‑150 (MQ=255)                           cccGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCgtg                                                                                                                                            >  1:1028253/1‑127 (MQ=255)                           cccGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCgtg                                                                                                                                            <  2:1028253/127‑1 (MQ=255)                           cccGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTa                                                                                                                     >  2:858489/1‑150 (MQ=255)                                 cGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACcgc                                                                                                               <  1:191648/150‑1 (MQ=255)                                  ggtggtggtTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACcgcg                                                                                                              >  1:1024613/1‑150 (MQ=255)                                      gtggtTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCCTGCGAGGTACACCACGC‑cgtggcgcccggcactttgt                                                                                                            >  2:1181747‑M2/1‑130 (MQ=255)                                        ggtTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGttt                                                                                                        <  1:124477/150‑1 (MQ=255)                                         gtTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTg                                                                                                       <  1:858489/150‑1 (MQ=255)                                               ggTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTgaacgaa                                                                                                 >  1:1039814/1‑150 (MQ=255)                                                        acGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGTGCAGTTTGAACGAACCGCAGGGt                                                                                        <  1:1076584/150‑1 (MQ=255)                                                            tCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCAACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCa                                                                                    <  2:126921/150‑1 (MQ=255)                                                              aCCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCGAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAgg                                                                                  >  2:696527/1‑150 (MQ=255)                                                                cGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGc                                                                                <  1:431064/150‑1 (MQ=255)                                                                   cACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTc                                                                             <  2:1024613/150‑1 (MQ=255)                                                                    aCCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCg                                                                            >  1:1181255/1‑150 (MQ=255)                                                                      ccccAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAGCGAACCGCAGGGTTGCAGGGCGTCGAg                                                                          >  2:42115/1‑150 (MQ=255)                                                                       cccAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGc                                                                         >  1:58451/1‑150 (MQ=255)                                                                          aGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTg                                                                      <  1:1058760/150‑1 (MQ=255)                                                                           gCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGa                                                                     <  2:1039814/150‑1 (MQ=255)                                                                             ttGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGc                                                                   <  2:294537/150‑1 (MQ=255)                                                                                 gTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGa                                                               <  2:914119/150‑1 (MQ=255)                                                                                     ggCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAATCGCAGGGTTGCAGGGCGTCGAGCTTGAGc                                                                   >  2:459601/1‑142 (MQ=255)                                                                                     ggCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAATCGCAGGGTTGCAGGGCGTCGAGCTTGAGc                                                                   <  1:459601/142‑1 (MQ=255)                                                                                      gCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCAAAGC‑‑GCGGGGTGCCCCTCGCAGGAGTAGGCTACACCGCGCGGATTGAACGACTCGCAGGTTGGGAGGGCGTGGCGCTTGAGCCAGATATTa                                                          >  1:361402/1‑150 (MQ=255)                                                                                           ggCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCAGGAAAACACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGAcc                                                     <  1:872128/150‑1 (MQ=255)                                                                                                    cAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCaa                                            >  2:588660/1‑150 (MQ=255)                                                                                                        ccGGCATTGCCACCTGACGAGGACACAAATTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAGCGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCACCggt                                        <  1:42115/150‑3 (MQ=255)                                                                                                             aTTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGa                                         <  1:443872/144‑1 (MQ=255)                                                                                                             aTTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGa                                         >  2:443872/1‑144 (MQ=255)                                                                                                                   aCCTGACGAGGACACAAAGTGCCGGGCGCCACGCctgcgaggtacaccacgcgcgtggcgcccggcacttt                                                                                                              >  2:155158‑M1/1‑34 (MQ=255)                                                                                                                   aCCTGACGAGGACACAAAGTGCCGGGCGCCACGCctgcgaggtacaccacgcgcgtggcgcccggcacttt                                                                                                              <  1:155158‑M1/71‑38 (MQ=255)                                                                                                                          gAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATc                      >  1:13391/1‑150 (MQ=255)                                                                                                                          gAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATc                      >  2:607327/1‑150 (MQ=255)                                                                                                                              acacAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAggg                  <  1:466656/150‑1 (MQ=255)                                                                                                                               cacaAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGCTGGCGATGCGTCGAGTTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAgggg                 >  1:209318/1‑150 (MQ=255)                                                                                                                                acaAAGTGCCGGGCGCCACGCgcgtggtgtacctcgcaggcgtggcgcccggcactttgtgtcctcgtcaggtggcaatgccggtttggcagtcgcctatgccggacgcaagctgggggtgccggtgaccgtggtgatacccgaaaccac                  >  2:1181747‑M1/1‑21 (MQ=255)                                                                                                                                acaAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTc                                                                             >  1:629442/1‑89 (MQ=255)                                                                                                                                acaAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTc                                                                             <  2:629442/89‑1 (MQ=255)                                                                                                                                acaAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCCCGGGGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAggggg                >  1:96568/1‑150 (MQ=255)                                                                                                                                  aaaGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGgcgtggcgcccggcactttgtgtcctcgtcaggt                                                                                             >  2:155158‑M2/1‑37 (MQ=255)                                                                                                                                  aaaGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGgcgtggcgcccggcactttgtgtcctcgtcaggt                                                                                             <  1:155158‑M2/71‑35 (MQ=255)                                                                                                                                        ccGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGTATGAAt        <  1:696527/150‑1 (MQ=255)                                                                                                                                          gggCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGTATGAAtgt      <  2:183233/150‑1 (MQ=255)                                                                                                                                              gcCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGTATGAATGTGCaa  <  2:13391/150‑1 (MQ=255)                                                                                                                                               ccACGCctgcgaggtacaccacgcgcgtggcgcccggcactttgtgtcctcgtcaggtggcaatgccggtttggcagtcgcctatgccggacgcaagctgggggtgccggtgaccgtggtgatacccgaaaccaccaccgaacgggccaa   <  2:1076584‑M1/150‑145 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GTCTTCCAGGTGCAGCAACTGCTTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGTATGAATGTGCAA  >  NC_002947/3332851‑3333141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.