New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3332998	42 (0.930)	3 (0.070)	3/234	NT	6.8%	coding (150/918 nt)	PP_2930	L‑serine dehydratase
	?	NC_002947	= 3333016	42 (0.990)					coding (132/918 nt)	PP_2930	L‑serine dehydratase

TTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGTATGAATGTGCAAGGTCATTGGCTGGCTCCGCGTAG  >  NC_002947/3332873‑3333164                                                                                                                                                  |                                                                                                                                                     ttGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGgcgtgg                                                                                                                                                <  2:1076584‑M2/150‑7 (MQ=255)    gCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCAACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCt                                                                                                                                             >  1:126921/1‑150 (MQ=255)     cccGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTa                                                                                                                                            >  2:858489/1‑150 (MQ=255)           cGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACcgc                                                                                                                                      <  1:191648/150‑1 (MQ=255)            ggtggtggtTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACcgcg                                                                                                                                     >  1:1024613/1‑150 (MQ=255)                gtggtTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGCCTGCGAGGTACACCACGC‑cgtggcgcccggcactttgt                                                                                                                                   >  2:1181747‑M2/1‑130 (MQ=255)                  ggtTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGttt                                                                                                                               <  1:124477/150‑1 (MQ=255)                   gtTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTg                                                                                                                              <  1:858489/150‑1 (MQ=255)                         ggTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTgaacgaa                                                                                                                        >  1:1039814/1‑150 (MQ=255)                                  acGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGTGCAGTTTGAACGAACCGCAGGGt                                                                                                               <  1:1076584/150‑1 (MQ=255)                                      tCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCAACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCa                                                                                                           <  2:126921/150‑1 (MQ=255)                                        aCCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCGAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAgg                                                                                                         >  2:696527/1‑150 (MQ=255)                                          cGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGc                                                                                                       <  1:431064/150‑1 (MQ=255)                                             cACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTc                                                                                                    <  2:1024613/150‑1 (MQ=255)                                              aCCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCg                                                                                                   >  1:1181255/1‑150 (MQ=255)                                                ccccAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAGCGAACCGCAGGGTTGCAGGGCGTCGAg                                                                                                 >  2:42115/1‑150 (MQ=255)                                                 cccAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGc                                                                                                >  1:58451/1‑150 (MQ=255)                                                    aGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTg                                                                                             <  1:1058760/150‑1 (MQ=255)                                                     gCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGa                                                                                            <  2:1039814/150‑1 (MQ=255)                                                       ttGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGc                                                                                          <  2:294537/150‑1 (MQ=255)                                                           gTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGa                                                                                      <  2:914119/150‑1 (MQ=255)                                                               ggCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAATCGCAGGGTTGCAGGGCGTCGAGCTTGAGc                                                                                          >  2:459601/1‑142 (MQ=255)                                                               ggCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAATCGCAGGGTTGCAGGGCGTCGAGCTTGAGc                                                                                          <  1:459601/142‑1 (MQ=255)                                                                gCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCAAAGC‑‑GCGGGGTGCCCCTCGCAGGAGTAGGCTACACCGCGCGGATTGAACGACTCGCAGGTTGGGAGGGCGTGGCGCTTGAGCCAGATATTa                                                                                 >  1:361402/1‑150 (MQ=255)                                                                     ggCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCAGGAAAACACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGAcc                                                                            <  1:872128/150‑1 (MQ=255)                                                                              cAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCaa                                                                   >  2:588660/1‑150 (MQ=255)                                                                                  ccGGCATTGCCACCTGACGAGGACACAAATTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAGCGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCACCggt                                                               <  1:42115/150‑3 (MQ=255)                                                                                       aTTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGa                                                                >  2:443872/1‑144 (MQ=255)                                                                                       aTTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGa                                                                <  1:443872/144‑1 (MQ=255)                                                                                                    gAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATc                                             >  2:607327/1‑150 (MQ=255)                                                                                                    gAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATc                                             >  1:13391/1‑150 (MQ=255)                                                                                                        acacAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAggg                                         <  1:466656/150‑1 (MQ=255)                                                                                                         cacaAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGCTGGCGATGCGTCGAGTTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAgggg                                        >  1:209318/1‑150 (MQ=255)                                                                                                          acaAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTc                                                                                                    <  2:629442/89‑1 (MQ=255)                                                                                                          acaAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTc                                                                                                    >  1:629442/1‑89 (MQ=255)                                                                                                          acaAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCCCGGGGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAggggg                                       >  1:96568/1‑150 (MQ=255)                                                                                                            aaaGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGgcgtggcgcccggcactttgtgtcctcgtcaggt                                                                                                                    >  2:155158‑M2/1‑37 (MQ=255)                                                                                                            aaaGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGgcgtggcgcccggcactttgtgtcctcgtcaggt                                                                                                                    <  1:155158‑M2/71‑35 (MQ=255)                                                                                                                  ccGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGTATGAAt                               <  1:696527/150‑1 (MQ=255)                                                                                                                    gggCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGTATGAAtgt                             <  2:183233/150‑1 (MQ=255)                                                                                                                        gcCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGTATGAATGTGCaa                         <  2:13391/150‑1 (MQ=255)                                                                                                                                  cgTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGTATGAATGTGCAAGGTCATtg                 <  1:127978/150‑1 (MQ=255)                                                                                                                                      gtgtACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGAc                                                                             <  2:72/86‑1 (MQ=255)                                                                                                                                      gtgtACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGAc                                                                             >  1:72/1‑86 (MQ=255)                                                                                                                                       tgtACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGTATGAATGTGCAAGGTCATtggctgg            >  1:730290/1‑150 (MQ=255)                                                                                                                                        gtACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGTATGAATGTGCAAGGTCATtggctggc           >  2:1158575/1‑150 (MQ=255)                                                                                                                                            cTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGTATGAATGTGCAAGGTCATTGGCTGGCTCcg       >  1:343955/1‑150 (MQ=255)                                                                                                                                            cTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGGATGAATGTGCAAGGTAATTGGCTGGGTCcg       >  1:143424/1‑150 (MQ=255)                                                                                                                                                 aGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCAGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGGATGAATGTGCAAGGGCATTGGCTGGCTCCGCGTAg  >  1:869580/1‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                     TTGGCCCGTTCGGTGGTGGTTTCGGGTATCACCACGGTCACCGGCACCCCCAGCTTGCGTCCGGCATAGGCGACTGCCAAACCGGCATTGCCACCTGACGAGGACACAAAGTGCCGGGCGCCACGC‑‑GCGTGGTGTACCTCGCAGGCGTGGCCTACACCGCGCAGTTTGAACGAACCGCAGGGTTGCAGGGCGTCGAGCTTGAGCCAGATATTACGACCGGCCGCCAACGACAGCGGGCGCGACTCGATCAGGGGGGTATGAATGTGCAAGGTCATTGGCTGGCTCCGCGTAG  >  NC_002947/3332873‑3333164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.