New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3455021 =	43 (0.950)	6 (0.140)	6/236	NT	13.8%	coding (913/1953 nt)	aacs	acetoacetyl‑CoA synthetase
	?	NC_002947	3455047 =	34 (0.790)					coding (887/1953 nt)	aacs	acetoacetyl‑CoA synthetase

CTCGGCCTCTATCAGGTCCAGAAGGCGCTCGGGGCCCGGGTGGAACGGCGAGCCGTCGTACAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACGGCAG  >  NC_002947/3454872‑3455156                                                                                                                                                      |                                                                                                                                         cTCGGCCTCTATCAGGTCCAGAAGGCGCTCGGGGCCCGGGTGGAACGGCGAGCCGTCGTACAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATc                                                                                                                                          <  2:909813/150‑1 (MQ=255)  tCGGCCTCTATCAGGTCCAGAAGGCGCTCGGGGCCCGGGTGGAACGGCGAGCCGTCGTACAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCTGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCg                                                                                                                                         >  2:55744/1‑150 (MQ=255)    ttcttccagcccggcggcgagccccgtttcaccccgctgccgttcgaccacccgctgtacatcctctattccagtggcaccaccggcgtgcccaagtgcattgtccatcgcgccggaggcgtgctgttgcaacacctcaaggaacaCGGc                                                                                                                                       >  2:447944‑M1/147‑150 (MQ=255)    ggCGTCTATCAGATCCAGAAGGCGCTCGGGGCCCGGGTGGAACGGCGAGCCGTCGTACAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAAAAGCACGTCATCGGc                                                                                                                                       >  2:503225/1‑150 (MQ=255)       ctctATCAGGTCCAGAAGGCGCTCGGGGCCCGGGTGGAACGGCGAGCCGTCGTACAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCtt                                                                                                                                    >  2:13577/1‑150 (MQ=255)       ctctATCAGGTCCAGAAGGCGCTCGGGGCCCGGGTGGAACGGCGAGCCGTCGTACAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCtt                                                                                                                                    >  1:624254/1‑150 (MQ=255)          tATCAGGTCCAGAAGGCGCTCGGGGCCCGGGTGGAACGGCGAGCCGTCGTACAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAg                                                                                                                                 <  1:1107883/150‑1 (MQ=255)             cAGGTCCAGAAGGCGCTCGGGGCCCGGGTGGAACGGCGAGCCGTCGTACAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTc                                                                                                                              <  2:970206/150‑1 (MQ=255)              ccggcggcgagccccgtttcaccccgctgccgttcgaccacccgctgtacatcctctattccagtggcaccaccggcgtgcccaagtgcattgtccatcgcgccggaggcgtgctgttgcaacacctcaaggaacaCGGCCTTCAGGTCg                                                                                                                             <  2:187716‑M1/14‑1 (MQ=255)                  ccAGAGGGCGCTCGGGGCCCGGGTGGAACGGCGAGCCGTCGTACAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTtgt                                                                                                                         <  2:344320/150‑1 (MQ=255)                   cAGAAGGCGCTCGGGGCCCGGGTGGAACGGCGAGCCGTCGTACAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTtgtg                                                                                                                        >  1:193786/1‑150 (MQ=255)                        ggCGCTCGGGGCCCGGGTGGAACGGCGAGCCGTCGTACAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGc                                                                                                                   <  1:13577/150‑1 (MQ=255)                           gcTCGGGGCCCGGGTGGAACGGCGAGCTGTCGTACAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCg‑t                                                                                                               >  2:39060/1‑150 (MQ=255)                           ccgtttcaccccgctgccgttcgaccacccgctgtacatcctctattccagtggcaccaccggcgtgcccaagtgcattgtccatcgcgccggaggcgtgctgttgcaacacctcaaggaacaCGGCCTTCAGGTCGTTGTGCAGGCCg‑t                                                                                                               <  2:219147‑M1/27‑1 (MQ=255)                           ccgtttcaccccgctgccgttcgaccacccgctgtacatcctctattccagtggcaccaccggcgtgcccaagtgcattgtccatcgcgccggaggcgtgctgttgcaacacctcaaggaacaCGGCCTTCAGGTCGTTGTGCAGGCCg‑t                                                                                                               >  1:187716‑M1/124‑150 (MQ=255)                                    cggggTGGAAGGGGGGGCGGTCGTACAGGACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGa                                                                                                      <  2:624254/148‑1 (MQ=255)                                    cccgctgccgttcgaccacccgctgtacatcctctattccagtggcaccaccggcgtgcccaagtgcattgtccatcgcgccggaggcgtgctgttgcaacacctcaaggaacaCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGa                                                                                                      >  1:219147‑M1/115‑150 (MQ=255)                                           gAACGGCGAGCCGTCGTACAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTg                                                                                               <  1:818957/150‑1 (MQ=255)                                                        cgctgtacatcctctattccagtggcaccaccggcgtgcccaagtgcattgtccatcgcgccggaggcgtgctgttgcaacacctcaaggaacaCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTcc                                                                                                          <  1:372251‑M1/32‑1 (MQ=255)                                                        cgctgtacatcctctattccagtggcaccaccggcgtgcccaagtgcattgtccatcgcgccggaggcgtgctgttgcaacacctcaaggaacaCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTcc                                                                                                          >  2:372251‑M1/95‑126 (MQ=255)                                                            aCAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAgg                                                                                                                    <  1:334983/113‑1 (MQ=255)                                                            aCAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAgg                                                                                                                    >  2:334983/1‑113 (MQ=255)                                                                  ccggCGTGGCACCCACCGCCAGGCCGCTCGCCAGCCAGTTCCACAGCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGAt                                                                        <  1:1150012/147‑1 (MQ=255)                                                                    tctattccagtggcaccaccggcgtgcccaagtgcattgtccatcgcgccggaggcgtgctgttgcaacacctcaaggaacaCg                                                                                                                                         <  1:416464‑M1/2‑1 (MQ=255)                                                                    tctattccagtggcaccaccggcgtgcccaagtgcattgtccatcgcgccggaggcgtgctgttgcaacacctcaaggaacaCg                                                                                                                                         >  2:416464‑M1/83‑84 (MQ=255)                                                                        tGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACaa                                                                  <  2:290923/150‑1 (MQ=255)                                                                         ggCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAAt                                                                 <  2:3292/150‑1 (MQ=255)                                                                          gCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAAt                                                                 <  1:38606/149‑1 (MQ=255)                                                                          gCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCAGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAAt                                                                 >  2:38606/1‑149 (MQ=255)                                                                           cacccaccGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCTTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGc                                                               <  2:472409/150‑1 (MQ=255)                                                                            acccaccGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTg                                                                                               <  1:622991/117‑1 (MQ=255)                                                                            acccaccGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTg                                                                                               >  2:622991/1‑117 (MQ=255)                                                                               caccGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACtt                                                           <  1:303079/150‑1 (MQ=255)                                                                                 ccGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTgg                                                         <  2:1196228/150‑1 (MQ=255)                                                                                                  agccagTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCa                                        <  2:193786/150‑1 (MQ=255)                                                                                                    ccagTTCCACATCATCCCGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACt                                      <  1:364887/150‑1 (MQ=255)                                                                                                     ctgTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTg                                     <  1:55744/148‑1 (MQ=255)                                                                                                     cagTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTg                                     <  2:1004291/150‑1 (MQ=255)                                                                                                        ttCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCAGCGCGATGGACAATGCACTTGGGCACGTCGGGGGTGCCACTggga                                  >  1:816522/1‑148 (MQ=255)                                                                                                           cacaTCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTGAGTGATGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGACTag                               >  1:384672/1‑150 (MQ=255)                                                                                                           cacaTCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATg                                                                <  2:1042937/117‑1 (MQ=255)                                                                                                           cacaTCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATg                                                                >  1:1042937/1‑117 (MQ=255)                                                                                                            acaTCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATaga                              >  1:64063/1‑150 (MQ=255)                                                                                                               tcatcCAGCCGCAGGTGGTGTGATAGAGCAGCACTTCAGCTGCCTTCAGGTCGTTGTGTAGGCCGACGGAACTT‑AGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGa                           <  1:625555/150‑1 (MQ=255)                                                                                                                       ccGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCggtgg                                             >  2:358650/1‑124 (MQ=255)                                                                                                                       ccGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCggtgg                                             <  1:358650/124‑1 (MQ=255)                                                                                                                             gtggtgTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCggt                                               >  2:1111034/1‑116 (MQ=255)                                                                                                                             gtggtgTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCggt                                               <  1:1111034/116‑1 (MQ=255)                                                                                                                                   tagtagAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCGTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAAc       <  1:39060/150‑1 (MQ=255)                                                                                                                                    agtagAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACg      <  2:64063/150‑1 (MQ=255)                                                                                                                                     gtagAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACgg     >  2:789736/1‑150 (MQ=255)                                                                                                                                      tagAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACGGc    >  2:1043714/1‑150 (MQ=255)                                                                                                                                        gAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACGGCAg  >  1:298146/1‑150 (MQ=255)                                                                                                                                               aCGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTgg                                                         <  1:754761/88‑1 (MQ=255)                                                                                                                                               aCGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTgg                                                         >  2:754761/1‑88 (MQ=255)                                                                                                                                                      |                                                                                                                                         CTCGGCCTCTATCAGGTCCAGAAGGCGCTCGGGGCCCGGGTGGAACGGCGAGCCGTCGTACAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACGGCAG  >  NC_002947/3454872‑3455156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.