New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3455021 =	43 (0.950)	6 (0.140)	6/236	NT	13.8%	coding (913/1953 nt)	aacs	acetoacetyl‑CoA synthetase
	?	NC_002947	3455047 =	34 (0.790)					coding (887/1953 nt)	aacs	acetoacetyl‑CoA synthetase

GCTCGGGGCCCGGGTGGAACGGCGAGCCGTCGTACAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACGGCAGCGGGGTGAAACGGGGCTCGCCGCCGGGCTGGAAGAAGTCA  >  NC_002947/3454898‑3455196                                                                                                                                                       |                                                                                                                                                      gcTCGGGGCCCGGGTGGAACGGCGAGCTGTCGTACAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCg‑t                                                                                                                                                       >  2:39060/1‑150 (MQ=255) ccgtttcaccccgctgccgttcgaccacccgctgtacatcctctattccagtggcaccaccggcgtgcccaagtgcattgtccatcgcgccggaggcgtgctgttgcaacacctcaaggaacaCGGCCTTCAGGTCGTTGTGCAGGCCg‑t                                                                                                                                                       >  1:187716‑M1/124‑150 (MQ=255) ccgtttcaccccgctgccgttcgaccacccgctgtacatcctctattccagtggcaccaccggcgtgcccaagtgcattgtccatcgcgccggaggcgtgctgttgcaacacctcaaggaacaCGGCCTTCAGGTCGTTGTGCAGGCCg‑t                                                                                                                                                       <  2:219147‑M1/27‑1 (MQ=255)          cggggTGGAAGGGGGGGCGGTCGTACAGGACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGa                                                                                                                                              <  2:624254/148‑1 (MQ=255)          cccgctgccgttcgaccacccgctgtacatcctctattccagtggcaccaccggcgtgcccaagtgcattgtccatcgcgccggaggcgtgctgttgcaacacctcaaggaacaCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGa                                                                                                                                              >  1:219147‑M1/115‑150 (MQ=255)                 gAACGGCGAGCCGTCGTACAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTg                                                                                                                                       <  1:818957/150‑1 (MQ=255)                              cgctgtacatcctctattccagtggcaccaccggcgtgcccaagtgcattgtccatcgcgccggaggcgtgctgttgcaacacctcaaggaacaCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTcc                                                                                                                                                  >  2:372251‑M1/95‑126 (MQ=255)                              cgctgtacatcctctattccagtggcaccaccggcgtgcccaagtgcattgtccatcgcgccggaggcgtgctgttgcaacacctcaaggaacaCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTcc                                                                                                                                                  <  1:372251‑M1/32‑1 (MQ=255)                                        ccggCGTGGCACCCACCGCCAGGCCGCTCGCCAGCCAGTTCCACAGCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGAt                                                                                                                <  1:1150012/147‑1 (MQ=255)                                              tGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACaa                                                                                                          <  2:290923/150‑1 (MQ=255)                                               ggCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAAt                                                                                                         <  2:3292/150‑1 (MQ=255)                                                gCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAAt                                                                                                         <  1:38606/149‑1 (MQ=255)                                                gCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCAGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAAt                                                                                                         >  2:38606/1‑149 (MQ=255)                                                 cacccaccGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCTTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGc                                                                                                       <  2:472409/150‑1 (MQ=255)                                                  acccaccGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTg                                                                                                                                       >  2:622991/1‑117 (MQ=255)                                                  acccaccGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTg                                                                                                                                       <  1:622991/117‑1 (MQ=255)                                                     caccGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACtt                                                                                                   <  1:303079/150‑1 (MQ=255)                                                       ccGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTgg                                                                                                 <  2:1196228/150‑1 (MQ=255)                                                                        agccagTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCa                                                                                <  2:193786/150‑1 (MQ=255)                                                                          ccagTTCCACATCATCCCGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACt                                                                              <  1:364887/150‑1 (MQ=255)                                                                           ctgTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTg                                                                             <  1:55744/148‑1 (MQ=255)                                                                           cagTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTg                                                                             <  2:1004291/150‑1 (MQ=255)                                                                              ttCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCAGCGCGATGGACAATGCACTTGGGCACGTCGGGGGTGCCACTggga                                                                          >  1:816522/1‑148 (MQ=255)                                                                                 cacaTCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTGAGTGATGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGACTag                                                                       >  1:384672/1‑150 (MQ=255)                                                                                 cacaTCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATg                                                                                                        <  2:1042937/117‑1 (MQ=255)                                                                                 cacaTCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATg                                                                                                        >  1:1042937/1‑117 (MQ=255)                                                                                  acaTCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATaga                                                                      >  1:64063/1‑150 (MQ=255)                                                                                     tcatcCAGCCGCAGGTGGTGTGATAGAGCAGCACTTCAGCTGCCTTCAGGTCGTTGTGTAGGCCGACGGAACTT‑AGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGa                                                                   <  1:625555/150‑1 (MQ=255)                                                                                             ccGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCggtgg                                                                                     <  1:358650/124‑1 (MQ=255)                                                                                             ccGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCggtgg                                                                                     >  2:358650/1‑124 (MQ=255)                                                                                                   gtggtgTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCggt                                                                                       <  1:1111034/116‑1 (MQ=255)                                                                                                   gtggtgTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCggt                                                                                       >  2:1111034/1‑116 (MQ=255)                                                                                                         tagtagAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCGTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAAc                                               <  1:39060/150‑1 (MQ=255)                                                                                                          agtagAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACg                                              <  2:64063/150‑1 (MQ=255)                                                                                                           gtagAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACgg                                             >  2:789736/1‑150 (MQ=255)                                                                                                            tagAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACGGc                                            >  2:1043714/1‑150 (MQ=255)                                                                                                              gAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACGGCAg                                          >  1:298146/1‑150 (MQ=255)                                                                                                                   tcaaggaacacggcctgcacaacgacctgaaggccgTGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACGGCAGCggg                                      >  1:219147‑M2/37‑150 (MQ=255)                                                                                                                     aCGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTgg                                                                                                 <  1:754761/88‑1 (MQ=255)                                                                                                                     aCGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTgg                                                                                                 >  2:754761/1‑88 (MQ=255)                                                                                                                       ggaacacggcctgcacaacgacctgaaggccgTGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCg                                                          <  1:372251‑M2/94‑1 (MQ=255)                                                                                                                       ggaacacggcctgcacaacgacctgaaggccgTGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCg                                                          >  2:372251‑M2/33‑126 (MQ=255)                                                                                                                            acggcctgcacaacgacctgaaggccgTGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACGGCAGCGGGGTGAAACgg                             <  2:219147‑M2/123‑1 (MQ=255)                                                                                                                            acggcctgcacaacgacctgaaggccgTGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACGGCAGCGGGGTGAAACgg                             >  1:187716‑M2/28‑150 (MQ=255)                                                                                                                                         gTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACGGCAGCGGGGTGAAACGGGGCTCGCCGCCggg               <  1:503225/150‑1 (MQ=255)                                                                                                                                         cgacctgaaggccgTGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACGGCAGCGGGGTGAAACGGGGCTCGCCGCCgg                <  2:187716‑M2/136‑1 (MQ=255)                                                                                                                                           tgtgCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACGGCAGCGGGGTGAAACGGGGCTCGCCGCCGGGCt             <  1:1043714/150‑1 (MQ=255)                                                                                                                                           tgtgCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACGGCAGCGGGGTGAAACGGGGCTCGCCGCCGGGCt             <  1:789736/150‑1 (MQ=255)                                                                                                                                                   gccgTGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACGGCAGCGGGGTGAAACGGGGCTCGCCGCCGGGCTGgaagaa      >  2:447944‑M2/5‑150 (MQ=255)                                                                                                                                                     cgTGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATaga                                                                      >  2:416464‑M2/3‑84 (MQ=255)                                                                                                                                                     cgTGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATaga                                                                      <  1:416464‑M2/82‑1 (MQ=255)                                                                                                                                                       tgtTCCTTGAGGTGTTGCGACAGCACGCCTCCAGCGCGATGGACAAGGCGCGTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACGGCAGCGGGGTGAAACGGGGCTCGCCGCCGGGCTGGAAGAAGTCa  <  2:816522/150‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                      GCTCGGGGCCCGGGTGGAACGGCGAGCCGTCGTACAGCACCAGCGTGGCACCCACCGCCAGGCCGCTGGCCAGCCAGTTCCACATCATCCAGCCGCAGGTGGTGTAGTAGAACAGCACGTCATCGGCCTTCAGGTCGTTGTGCAGGCCG‑TGTTCCTTGAGGTGTTGCAACAGCACGCCTCCGGCGCGATGGACAATGCACTTGGGCACGCCGGTGGTGCCACTGGAATAGAGGATGTACAGCGGGTGGTCGAACGGCAGCGGGGTGAAACGGGGCTCGCCGCCGGGCTGGAAGAAGTCA  >  NC_002947/3454898‑3455196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.