New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3546886	37 (0.820)	4 (0.090)	4/240	NT	10.6%	coding (118/1527 nt)	PP_3131	membrane protein
	?	NC_002947	= 3546913	32 (0.730)					coding (91/1527 nt)	PP_3131	membrane protein

GCGGGATCAGGAACAGCAGCATGTAGAACAGCGCCATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTACACCTTTCCCTTGGTGGGCAAC  >  NC_002947/3546739‑3547035                                                                                                                                                    |                                                                                                                                                      gCGGGATCAGGAACAGCAGCATGTAGAACAGCGCCATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTgc                                                                                                                                                     <  1:948320/150‑1 (MQ=255)             aCAGCAGCATGTAGAACAGCGCCATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGGCGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGt                                                                                                                                         >  2:1207842/1‑150 (MQ=255)               agcagcATGTAGAACAGCGCCATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAg                                                                                                                                       >  1:1195148/1‑150 (MQ=255)                        tAGAACAGCGCCATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCCGCCCGTGTGGGAGAAAACAGTCCCACGGCTCATCAGGTTTCTCATATTGCGCCGGCGCTTGTAGTCGCTgcgc                                                                                                                              <  1:687909/150‑1 (MQ=255)                        tAGAACAGCGCCATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGc                                                                                                                              >  2:909591/1‑150 (MQ=255)                           aaCAGCGCCATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACGGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGa                                                                                                                           >  2:228026‑M2/1‑149 (MQ=255)                           aaCAGCGCCATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGa                                                                                                                           <  2:661439‑M2/150‑2 (MQ=255)                              aGCGCCATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGaatc                                                                                                                        <  2:157571‑M2/150‑5 (MQ=255)                              aGCGCCATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGaatc                                                                                                                        >  1:933534‑M2/1‑146 (MQ=255)                                   cATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACCGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTc                                                                                                                   >  1:348510/1‑150 (MQ=255)                                   cATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTc                                                                                                                                     >  1:663425/1‑132 (MQ=255)                                   cATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTc                                                                                                                                     <  2:663425/132‑1 (MQ=255)                                   cATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTc                                                                                                                   <  1:157571/150‑1 (MQ=255)                                          ttGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCa                                                                                                            <  2:253940/150‑1 (MQ=255)                                                       gcCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCa                                                                                               >  1:1007132/1‑150 (MQ=255)                                                           ggCCAGCAACAGGGCGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAg                                                                                           <  1:1207842/150‑1 (MQ=255)                                                              cAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGaa                                                                                        <  2:594673/150‑1 (MQ=255)                                                                gCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGa                                                                                      <  1:357914/150‑1 (MQ=255)                                                                gCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGa                                                                                      >  2:357914/1‑150 (MQ=255)                                                                 cAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGAc                                                                                     <  1:909591/150‑1 (MQ=255)                                                                    cAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTccgctcagcgactacaagcgccggcgcaatc                                                                                                                        <  1:367474‑M1/112‑32 (MQ=255)                                                                    cAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTccgctcagcgactacaagcgccggcgcaatc                                                                                                                        >  2:367474‑M1/1‑81 (MQ=255)                                                                       gacgacCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCt                                                                               >  2:760598/1‑150 (MQ=255)                                                                       gacgacCGCGCCCACCCCCAGGTACAGCCAGAAGCTGCGAAACCACACAGGTAACCGGTTCAGCAGGAACCACATATTGCGCCGGCGCTTGTAGTCGCTTAGCGGAATCAGGTCCGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCt                                                                               >  1:209737/1‑150 (MQ=255)                                                                            ccGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCa                                                                          >  2:123906/1‑150 (MQ=255)                                                                            ccGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGGCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCCGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCCCGCTCGCCa                                                                          >  2:123661/1‑150 (MQ=255)                                                                             cgcgCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAg                                                                         >  1:157554/1‑150 (MQ=255)                                                                                  ccACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACa                                                                    <  2:1195148/150‑1 (MQ=255)                                                                                        ccAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGa                                                              >  2:1084636/1‑150 (MQ=255)                                                                                        ccAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGa                                                              <  2:209737/150‑1 (MQ=255)                                                                                            gTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGAt                                                          <  2:1007132/150‑1 (MQ=255)                                                                                                     gAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTccgctcagcgactacaagcgccggcgcaatctgtg                                                                                                                    >  1:444128‑M1/1‑48 (MQ=255)                                                                                                     gAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTccgctcagcgactacaagcgccggcgcaatctgtg                                                                                                                    <  2:444128‑M1/83‑36 (MQ=255)                                                                                                            tgGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGt                                          >  1:228273/1‑150 (MQ=255)                                                                                                                agaAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAg                                      >  2:172368/1‑150 (MQ=255)                                                                                                                  aaaaaaGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAg                                                                   >  2:256346/1‑119 (MQ=255)                                                                                                                  aaaaaaGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAg                                                                   <  1:256346/119‑1 (MQ=255)                                                                                                                          cagcagGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTa                            >  1:190441/1‑150 (MQ=255)                                                                                                                           agcagGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTAt                           <  2:1171007/150‑1 (MQ=255)                                                                                                                           agcagGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTAt                           <  2:228273/150‑1 (MQ=255)                                                                                                                                ggTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTaca                      <  2:200569/150‑1 (MQ=255)                                                                                                                                  tCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTACAcc                    >  2:1107501/1‑150 (MQ=255)                                                                                                                                     gcagGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTACACCttt                 <  2:290830/150‑1 (MQ=255)                                                                                                                                     gcagGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTACACCttt                 <  1:1084636/150‑1 (MQ=255)                                                                                                                                      cagGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTACACCTTTc                <  1:172368/150‑1 (MQ=255)                                                                                                                                             cacaGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGaatctgtggttcctgctgaccctgctggcttttttctcccacagcttc                                                                            <  2:444128‑M2/83‑49 (MQ=255)                                                                                                                                             cacaGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGaatctgtggttcctgctgaccctgctggcttttttctcccacagcttc                                                                            >  1:444128‑M2/1‑35 (MQ=255)                                                                                                                                               caGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTACACCTTTCCCTtggtgg       <  1:760598/150‑1 (MQ=255)                                                                                                                                                 gATTccgctcagcgactacaagcgccggcgcaatctgtggttcctgctgaccctgctggcttttttctcccacagcttctggctgtacctgggggtgggcgcggtcgtcctgttgctggccgggcgccgcgagcacaaccccatggcgct     <  2:157571‑M1/150‑147 (MQ=255)                                                                                                                                                 gATTccgctcagcgactacaagcgccggcgcaatctgtggttcctgctgaccctgctggcttttttctcccacagcttctggctgtacctgggggtgggcgcggtcgtcctgttgctggccgggcgccgcgagcacaaccccatggcgct     >  1:933534‑M1/1‑4 (MQ=255)                                                                                                                                                 gATTGCGCCGGCGCTTGTAGTCGCTGAGCGGaatctgtggttcctgctgaccctgctggcttttttctcccacagcttctggctgtacctgggggtgggcgcggtcgtcctg                                           >  2:367474‑M2/1‑31 (MQ=255)                                                                                                                                                 gATTGCGCCGGCGCTTGTAGTCGCTGAGCGGaatctgtggttcctgctgaccctgctggcttttttctcccacagcttctggctgtacctgggggtgggcgcggtcgtcctg                                           <  1:367474‑M2/112‑82 (MQ=255)                                                                                                                                                    tccgctcagcgactacaagcgccggcgcaatctgtggttcctgctgaccctgctggcttttttctcccacagcttctggctgtacctgggggtgggcgcggtcgtcctgttgctggccgggcgccgcgagcacaaccccatggcgctgtt  <  2:661439‑M1/150‑150 (MQ=255)                                                                                                                                                    tccgctcagcgactacaagcgccggcgcaatctgtggttcctgctgaccctgctggcttttttctcccacagcttctggccgtacctgggggtgggcgcggtcgtcctgttgctggccgggcgccgcgagcacaaccccatggcgctgtt  >  2:228026‑M1/1‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      GCGGGATCAGGAACAGCAGCATGTAGAACAGCGCCATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTACACCTTTCCCTTGGTGGGCAAC  >  NC_002947/3546739‑3547035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.