New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3546886	37 (0.820)	4 (0.090)	4/240	NT	10.6%	coding (118/1527 nt)	PP_3131	membrane protein
	?	NC_002947	= 3546913	32 (0.730)					coding (91/1527 nt)	PP_3131	membrane protein

AACAGCGCCATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTACACCTTTCCCTTGGTGGGCAACGGCTAGCATCGTGGCTAATT  >  NC_002947/3546765‑3547055                                                                                                                                                     |                                                                                                                                               aaCAGCGCCATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACGGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGa                                                                                                                                               >  2:228026‑M2/1‑149 (MQ=255) aaCAGCGCCATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGa                                                                                                                                               <  2:661439‑M2/150‑2 (MQ=255)    aGCGCCATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGaatc                                                                                                                                            <  2:157571‑M2/150‑5 (MQ=255)    aGCGCCATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGaatc                                                                                                                                            >  1:933534‑M2/1‑146 (MQ=255)         cATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACCGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTc                                                                                                                                       >  1:348510/1‑150 (MQ=255)         cATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTc                                                                                                                                       <  1:157571/150‑1 (MQ=255)                ttGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCa                                                                                                                                <  2:253940/150‑1 (MQ=255)                             gcCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCa                                                                                                                   >  1:1007132/1‑150 (MQ=255)                                 ggCCAGCAACAGGGCGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAg                                                                                                               <  1:1207842/150‑1 (MQ=255)                                    cAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGaa                                                                                                            <  2:594673/150‑1 (MQ=255)                                      gCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGa                                                                                                          >  2:357914/1‑150 (MQ=255)                                      gCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGa                                                                                                          <  1:357914/150‑1 (MQ=255)                                       cAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGAc                                                                                                         <  1:909591/150‑1 (MQ=255)                                             gacgacCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCt                                                                                                   >  2:760598/1‑150 (MQ=255)                                             gacgacCGCGCCCACCCCCAGGTACAGCCAGAAGCTGCGAAACCACACAGGTAACCGGTTCAGCAGGAACCACATATTGCGCCGGCGCTTGTAGTCGCTTAGCGGAATCAGGTCCGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCt                                                                                                   >  1:209737/1‑150 (MQ=255)                                                  ccGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCa                                                                                              >  2:123906/1‑150 (MQ=255)                                                  ccGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGGCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCCGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCCCGCTCGCCa                                                                                              >  2:123661/1‑150 (MQ=255)                                                   cgcgCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAg                                                                                             >  1:157554/1‑150 (MQ=255)                                                        ccACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACa                                                                                        <  2:1195148/150‑1 (MQ=255)                                                              ccAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGa                                                                                  <  2:209737/150‑1 (MQ=255)                                                              ccAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGa                                                                                  >  2:1084636/1‑150 (MQ=255)                                                                  gTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGAt                                                                              <  2:1007132/150‑1 (MQ=255)                                                                                  tgGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGt                                                              >  1:228273/1‑150 (MQ=255)                                                                                      agaAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAg                                                          >  2:172368/1‑150 (MQ=255)                                                                                        aaaaaaGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAg                                                                                       <  1:256346/119‑1 (MQ=255)                                                                                        aaaaaaGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAg                                                                                       >  2:256346/1‑119 (MQ=255)                                                                                                cagcagGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTa                                                >  1:190441/1‑150 (MQ=255)                                                                                                 agcagGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTAt                                               <  2:1171007/150‑1 (MQ=255)                                                                                                 agcagGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTAt                                               <  2:228273/150‑1 (MQ=255)                                                                                                      ggTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTaca                                          <  2:200569/150‑1 (MQ=255)                                                                                                        tCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTACAcc                                        >  2:1107501/1‑150 (MQ=255)                                                                                                           gcagGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTACACCttt                                     <  2:290830/150‑1 (MQ=255)                                                                                                           gcagGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTACACCttt                                     <  1:1084636/150‑1 (MQ=255)                                                                                                            cagGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTACACCTTTc                                    <  1:172368/150‑1 (MQ=255)                                                                                                                   cacaGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGaatctgtggttcctgctgaccctgctggcttttttctcccacagcttc                                                                                                >  1:444128‑M2/1‑35 (MQ=255)                                                                                                                   cacaGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGaatctgtggttcctgctgaccctgctggcttttttctcccacagcttc                                                                                                <  2:444128‑M2/83‑49 (MQ=255)                                                                                                                     caGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTACACCTTTCCCTtggtgg                           <  1:760598/150‑1 (MQ=255)                                                                                                                       gATTGCGCCGGCGCTTGTAGTCGCTGAGCGGaatctgtggttcctgctgaccctgctggcttttttctcccacagcttctggctgtacctgggggtgggcgcggtcgtcctg                                                               <  1:367474‑M2/112‑82 (MQ=255)                                                                                                                       gATTGCGCCGGCGCTTGTAGTCGCTGAGCGGaatctgtggttcctgctgaccctgctggcttttttctcccacagcttctggctgtacctgggggtgggcgcggtcgtcctg                                                               >  2:367474‑M2/1‑31 (MQ=255)                                                                                                                                       gTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTACACCTTTCCCTTGGTGGGCAACGGCTAGCATCGTg         <  2:157554/150‑1 (MQ=255)                                                                                                                                              cTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTACACCTTTCCCTTGGTGGGCAACGGCTAGCATCGTGGCTAAtt  <  1:123906/150‑1 (MQ=255)                                                                                                                                              cTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTACACCTTTCCCTTGGTGGGCAACGGCTAGCATCGTGGCTAAtt  <  1:123661/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               AACAGCGCCATGGGGTTGTGCTCGCGGCGCCCGGCCAGCAACAGGACGACCGCGCCCACCCCCAGGTACAGCCAGAAGCTGTGGGAGAAAAAAGCCAGCAGGGTCAGCAGGAACCACAGATTGCGCCGGCGCTTGTAGTCGCTGAGCGGAATCAGGTCGGTGGCAGGCCGCCGGGCCATCAGGAAGACCACGCTCGCCAGAAACAGGATGACGATCAACGCACGAAAATGTTCAGGCATCGGCTATGTACACCTTTCCCTTGGTGGGCAACGGCTAGCATCGTGGCTAATT  >  NC_002947/3546765‑3547055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.