New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4064806 = | 51 (1.130) | 4 (0.090) | 4/240 | NT | 8.0% | coding (1198/1491 nt) | PP_3582 | RND transporter outer membrane protein |
? | NC_002947 | 4064841 = | 43 (0.980) | coding (1163/1491 nt) | PP_3582 | RND transporter outer membrane protein |
ATCCAGATAGCCGATCAGCCCGGCGCGGTACTGGTTCTCGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTGGGCAGCTCGATCCAGT > NC_002947/4064657‑4064952 | aTCCAGATAGCCGATCAGCCCGGCGCGGTACTGGTTCTCGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTc > 1:1019424/1‑150 (MQ=255) aTCCAGATAGCCGATCAGCCCGGCGCGGTACTGGTTCTCGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTc < 2:370012/150‑1 (MQ=255) aGCCGATCAGCCCGGCGCGGTACTGGTTCTCGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCAACTTCCCTGAAACCGTCCAGCACgg > 1:463709/1‑150 (MQ=255) ccGATCAGCCCGGCGCGGTACTGGTTCTCGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTc > 1:1084039/1‑150 (MQ=255) aGCCCGGCGCGGTACTGGTTCTCGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCgg < 2:1019424/150‑1 (MQ=255) gCCCGGCGCGGTACTGGTTCTCGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGt > 1:212142/1‑150 (MQ=255) tGGTTCTCGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTc < 2:1047564/150‑1 (MQ=255) gTTCTCGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTg > 2:2663/1‑150 (MQ=255) ttCTCGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCg > 2:997179/1‑131 (MQ=255) ttCTCGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCg < 1:997179/131‑1 (MQ=255) ttCTCGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTgg > 1:393797/1‑150 (MQ=255) ttCTCGGTCAGGCGCAACGACTCGCGGGCAACATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTgg < 2:758818/150‑1 (MQ=255) tctcGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGt > 2:64892/1‑150 (MQ=255) tcGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCa > 1:667779/1‑150 (MQ=255) cAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTGCTGCGCCACCGTCTGGTCATacac < 2:523785/150‑1 (MQ=255) aGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACg > 2:976365/1‑150 (MQ=255) gcgcAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTc > 2:810474/1‑105 (MQ=255) gcgcAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTc < 1:810474/105‑1 (MQ=255) gACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTg < 2:682801/150‑1 (MQ=255) tCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGt < 2:1155265/104‑1 (MQ=255) tCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGt > 1:1155265/1‑104 (MQ=255) caTCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCgg < 1:59948/150‑1 (MQ=255) aTCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGgc > 2:1113117/1‑150 (MQ=255) tCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGgcg < 2:1084039/150‑1 (MQ=255) aaGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCt > 1:483304/1‑150 (MQ=255) cccgcagctggcgctgaccctgttcgacgccggcaaacgcagcgccgaggtcgaccgcacggtggccgtgtatgaCCAGCACGGTCTGGCGGTACTGCGCCACCGTc < 2:133805‑M1/32‑1 (MQ=255) cccgcagctggcgctgaccctgttcgacgccggcaaacgcagcgccgaggtcgaccgcacggtggccgtgtatgaCCAGCACGGTCTGGCGGTACTGCGCCACCGTc > 1:133805‑M1/76‑107 (MQ=255) ctctTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGttt > 1:624824/1‑150 (MQ=255) ctTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGc < 1:773727/150‑1 (MQ=255) ttGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGcc < 1:64892/150‑1 (MQ=255) gcgcACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGc < 2:624824/150‑1 (MQ=255) gcgcACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGc > 2:984578/1‑150 (MQ=255) caccacGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTGATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTc < 2:212142/150‑1 (MQ=255) caccacGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTc < 2:463709/150‑1 (MQ=255) acGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCTTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAAc < 1:264367/150‑1 (MQ=255) accctgttcgacgccggcaaacgcagcgccgaggtcgaccgcacggtggccatgtatgaCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTc < 1:898291‑M1/37‑1 (MQ=255) accctgttcgacgccggcaaacgcagcgccgaggtcgaccgcacggtggccatgtatgaCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTc > 2:898291‑M1/60‑96 (MQ=255) gCTTCATCGCCATACACCTTCAGCTGAACCCGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAgg < 1:984578/150‑1 (MQ=255) tCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTc < 2:483304/150‑1 (MQ=255) tCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAgc > 1:1033424/1‑150 (MQ=255) ccATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGcc > 2:153276/1‑150 (MQ=255) cATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCa > 1:565598/1‑150 (MQ=255) tACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGc > 1:1041881/1‑150 (MQ=255) cTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCCGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCgg < 1:976365/150‑1 (MQ=255) cTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTAc > 1:1038558/1‑150 (MQ=255) tGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTAcc > 1:435116/1‑150 (MQ=255) cagcagGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATacac < 2:79955/72‑1 (MQ=255) cagcagGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATacac > 1:79955/1‑72 (MQ=255) cagcagGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTa < 2:70790/143‑1 (MQ=255) cagcagGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTa > 1:70790/1‑143 (MQ=255) agcagGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAg > 1:1000128/1‑150 (MQ=255) agcagGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAg > 1:82577/1‑150 (MQ=255) tCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTg < 2:1033424/150‑1 (MQ=255) ccACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTgg < 2:393797/150‑1 (MQ=255) cACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGTCTACCGACCAGTAGCGGTTggg < 1:153276/150‑1 (MQ=255) cACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTggg < 1:2663/150‑1 (MQ=255) ttCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTGGGCAg > 2:491042/1‑150 (MQ=255) ttCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTGGGCAg < 1:1113117/150‑1 (MQ=255) ccTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTGGGCAGCTc < 2:667779/150‑1 (MQ=255) cGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGAc > 1:457585/1‑122 (MQ=255) cGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGAc < 2:457585/122‑1 (MQ=255) cGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTGGGCAGCTCGATCCAGt > 2:521819/1‑150 (MQ=255) | ATCCAGATAGCCGATCAGCCCGGCGCGGTACTGGTTCTCGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTGGGCAGCTCGATCCAGT > NC_002947/4064657‑4064952 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |