New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4064806 =	51 (1.130)	4 (0.090)	4/240	NT	8.0%	coding (1198/1491 nt)	PP_3582	RND transporter outer membrane protein
	?	NC_002947	4064841 =	43 (0.980)					coding (1163/1491 nt)	PP_3582	RND transporter outer membrane protein

TCTCGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTGGGCAGCTCGATCCAGTTGCTGAAGCTGCTGCTGGAATAACCGCCAC  >  NC_002947/4064692‑4064982                                                                                                                                                      |                                                                                                                                              tctcGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGt                                                                                                                                               >  2:64892/1‑150 (MQ=255)   tcGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCa                                                                                                                                             >  1:667779/1‑150 (MQ=255)        cAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTGCTGCGCCACCGTCTGGTCATacac                                                                                                                                        <  2:523785/150‑1 (MQ=255)         aGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACg                                                                                                                                       >  2:976365/1‑150 (MQ=255)                  gACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTg                                                                                                                              <  2:682801/150‑1 (MQ=255)                               caTCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCgg                                                                                                                 <  1:59948/150‑1 (MQ=255)                                aTCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGgc                                                                                                                >  2:1113117/1‑150 (MQ=255)                                 tCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGgcg                                                                                                               <  2:1084039/150‑1 (MQ=255)                                   aaGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCt                                                                                                             >  1:483304/1‑150 (MQ=255)                                         ctctTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGttt                                                                                                       >  1:624824/1‑150 (MQ=255)                                           ctTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGc                                                                                                     <  1:773727/150‑1 (MQ=255)                                            ttGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGcc                                                                                                    <  1:64892/150‑1 (MQ=255)                                               gcgcACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGc                                                                                                 >  2:984578/1‑150 (MQ=255)                                               gcgcACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGc                                                                                                 <  2:624824/150‑1 (MQ=255)                                                  caccacGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTGATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTc                                                                                              <  2:212142/150‑1 (MQ=255)                                                  caccacGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTc                                                                                              <  2:463709/150‑1 (MQ=255)                                                      acGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCTTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAAc                                                                                          <  1:264367/150‑1 (MQ=255)                                                        accctgttcgacgccggcaaacgcagcgccgaggtcgaccgcacggtggccatgtatgaCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTc                                                                                                                                              >  2:898291‑M1/60‑96 (MQ=255)                                                        accctgttcgacgccggcaaacgcagcgccgaggtcgaccgcacggtggccatgtatgaCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTc                                                                                                                                              <  1:898291‑M1/37‑1 (MQ=255)                                                         gCTTCATCGCCATACACCTTCAGCTGAACCCGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAgg                                                                                       <  1:984578/150‑1 (MQ=255)                                                            tCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTc                                                                                    <  2:483304/150‑1 (MQ=255)                                                               tCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAgc                                                                                 >  1:1033424/1‑150 (MQ=255)                                                                  ccATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGcc                                                                              >  2:153276/1‑150 (MQ=255)                                                                   cATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCa                                                                             >  1:565598/1‑150 (MQ=255)                                                                     tACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGc                                                                           >  1:1041881/1‑150 (MQ=255)                                                                          cTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCCGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCgg                                                                      <  1:976365/150‑1 (MQ=255)                                                                                cTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTAc                                                                >  1:1038558/1‑150 (MQ=255)                                                                                 tGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTAcc                                                               >  1:435116/1‑150 (MQ=255)                                                                                      cagcagGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATacac                                                                                                                                        <  2:79955/72‑1 (MQ=255)                                                                                      cagcagGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATacac                                                                                                                                        >  1:79955/1‑72 (MQ=255)                                                                                      cagcagGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTa                                                                 >  1:70790/1‑143 (MQ=255)                                                                                      cagcagGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTa                                                                 <  2:70790/143‑1 (MQ=255)                                                                                       agcagGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAg                                                         >  1:82577/1‑150 (MQ=255)                                                                                       agcagGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAg                                                         >  1:1000128/1‑150 (MQ=255)                                                                                                tCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTg                                                <  2:1033424/150‑1 (MQ=255)                                                                                                 ccACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTgg                                               <  2:393797/150‑1 (MQ=255)                                                                                                  cACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGTCTACCGACCAGTAGCGGTTggg                                              <  1:153276/150‑1 (MQ=255)                                                                                                  cACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTggg                                              <  1:2663/150‑1 (MQ=255)                                                                                                     ttCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTGGGCAg                                           >  2:491042/1‑150 (MQ=255)                                                                                                     ttCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTGGGCAg                                           <  1:1113117/150‑1 (MQ=255)                                                                                                        ccTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTGGGCAGCTc                                        <  2:667779/150‑1 (MQ=255)                                                                                                                cGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGAc                                                            <  2:457585/122‑1 (MQ=255)                                                                                                                cGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGAc                                                            >  1:457585/1‑122 (MQ=255)                                                                                                                cGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTGGGCAGCTCGATCCAGt                                >  2:521819/1‑150 (MQ=255)                                                                                                                 gaccagacggtggcgcagtaccgccagaccgtgctggTCATACATGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGt                                                                                     >  2:898291‑M2/38‑96 (MQ=255)                                                                                                                 gaccagacggtggcgcagtaccgccagaccgtgctggTCATACATGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGt                                                                                     <  1:898291‑M2/59‑1 (MQ=255)                                                                                                                      gacggtggcgcagtaccgccagaccgtgctggTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCggg                                                                     >  1:133805‑M2/33‑107 (MQ=255)                                                                                                                      gacggtggcgcagtaccgccagaccgtgctggTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCggg                                                                     <  2:133805‑M2/75‑1 (MQ=255)                                                                                                                       cACGGTCTGGCGGTACTGCGCCAACGACTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTGGGCAGCTCGATCCAGTTGCTGaa                         >  1:465615/1‑150 (MQ=255)                                                                                                                         cGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGtt                                                 >  1:989095/1‑124 (MQ=255)                                                                                                                         cGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGtt                                                 <  2:989095/124‑1 (MQ=255)                                                                                                                                              ccGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTGGGCAGCTCGATCCAGTTGCTGAAGCTGCTGCTGGAATAACCGCCAc  >  1:228910/1‑150 (MQ=255)                                                                                                                                                      tCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTGGGCAGCTCGATc                                    >  2:75952/1‑108 (MQ=255)                                                                                                                                                      tCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTGGGCAGCTCGATc                                    <  1:75952/108‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                              TCTCGGTCAGGCGCAACGACTCGCGGGCAGCATCAAGCGCCTCTTGGCGCACCACGGCTTCATCGCCATACACCTTCAGCTGAACCAGCAGGTTTTCCACTTCCCTGAAACCGTCCAGCACGGTCTGGCGGTACTGCGCCACCGTCTGGTCATACACGGCCACCGTGCGGTCGACCTCGGCGCTGCGTTTGCCGGCGTCGAACAGGGTCAGCGCCAGCTGCGGGCCTACCGACCAGTAGCGGTTGGGCAGCTCGATCCAGTTGCTGAAGCTGCTGCTGGAATAACCGCCAC  >  NC_002947/4064692‑4064982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.