New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4817931 =	30 (0.660)	5 (0.110)	5/246	NT	14.5%	coding (582/795 nt)	PP_4242	conserved protein of unknown function with Rhs repeat‑associated core domain
	?	NC_002947	4817955 =	29 (0.650)					coding (606/795 nt)	PP_4242	conserved protein of unknown function with Rhs repeat‑associated core domain

AGGATATCATGGTGGCATCAGGAGCTCTACGTGGTCTTTAGAGTCTGGCGTTCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAGGGAAAGTTATTTAATTGAAGAACATGCA  >  NC_002947/4817787‑4818072                                                                                                                                                 |                                                                                                                                              aGGATATCATGGTGGCATCAGGAGCTCTACGTGGTCTTTAGAGTCTGGCGTTCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCt                                                                                                                                          >  1:988946/1‑150 (MQ=255)  ggATATCATGGTGGCATCAGGAGCTCTACGTGGTCTTTAGAGTCTGGCGTTCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCtt                                                                                                                                         <  2:988946/150‑1 (MQ=255)         tactcgaatattagtaaatgcatgttcttcaattaaataactttccctggttgcctcatttttcccatcccatatttttttgatcttgcccgcagccacaagcacatcgaaatccttgatgtacacaccaaatacaCAAGCTTCACAAAg                                                                                                                                  <  2:823516‑M1/14‑1 (MQ=255)                           ctACGTGGTCTTTAGAGTCTGGCGTTCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTg                                                                                                                >  1:425173/1‑150 (MQ=255)                              cGTGGTCTTTAGAGTCTGGCGTTCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGgtg                                                                                                             >  1:384010/1‑150 (MQ=255)                                 ggTCTTTAGAGTCTGGCGTTCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAATTATGGCGTGGCTGAGCTCTATGCGAATGCAGCCGCCAAACTTCACAAAGGTGAAGCTCGTGTATTTGgtgttt                                                                                                          >  2:3323/1‑148 (MQ=255)                                    cTTTAGAGTCTGGCGTTCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGACTGCCGCCGCCAGCCTGTATAAAAGGGAAGCTCTTGTATTTGGTGTGTACa                                                                                                       >  2:11150/1‑150 (MQ=255)                                        agagTCTGGCGTTCAGCCCCAGCGACATCAAATTGTTGATCGGGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCaa                                                                                                   <  1:11150/150‑1 (MQ=255)                                              tGGCGTTCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGGCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGAttt                                                                                             >  1:46053/1‑150 (MQ=255)                                                  gTTCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGAt                                                                                         >  1:1060285/1‑150 (MQ=255)                                                   ttCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGAtg                                                                                        <  1:766800/150‑1 (MQ=255)                                                          ccAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTtgt                                                                                 >  2:995785/1‑150 (MQ=255)                                                                                       aGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTtgt                                                                                 <  1:155985/121‑1 (MQ=255)                                                                                       aGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTtgt                                                                                 >  2:155985/1‑121 (MQ=255)                                                                                         gggTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCgtgt                                                                                                                     <  1:312940/83‑1 (MQ=255)                                                                                         gggTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCgtgt                                                                                                                     >  2:312940/1‑83 (MQ=255)                                                                                            ttttattttaCACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGGTtgt                                                                                 >  1:969483/1‑116 (MQ=255)                                                                                            ttttattttaCACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTtgt                                                                                 <  2:969483/116‑1 (MQ=255)                                                                                            ttttattttaCACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATatgggatggg                                               >  1:864442/1‑150 (MQ=255)                                                                                            ttttattttaCACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATatgggatggg                                               >  1:963080/1‑150 (MQ=255)                                                                                             tttattttaCACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGATTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATAtgggatggga                                              <  2:425173/150‑1 (MQ=255)                                                                                              ttattttaCACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGaa                                             >  2:664538/1‑150 (MQ=255)                                                                                                 ttttaCACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCtt                                                                                   >  1:952522/1‑109 (MQ=255)                                                                                                 ttttaCACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCtt                                                                                   <  2:952522/109‑1 (MQ=255)                                                                                                    taCACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGa                                       <  2:1060285/150‑1 (MQ=255)                                                                                                              gcacatcgaaatccttgatgtacacaccaaatacaCGAGCTTCACCTTTGTGAAGCTTGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAgg                             <  1:388592‑M1/115‑1 (MQ=255)                                                                                                                  atcgaaatccttgatgtacacaccaaatacaCGAGCTTCACCTTTGTGAAGCTTGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTtgtg                                                                                <  2:717849‑M1/64‑1 (MQ=255)                                                                                                                  atcgaaatccttgatgtacacaccaaatacaCGAGCTTCACCTTTGTGAAGCTTGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTtgtg                                                                                >  1:717849‑M1/32‑95 (MQ=255)                                                                                                                        ccGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGaaa                                            <  2:36057/125‑1 (MQ=255)                                                                                                                        ccGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGaaa                                            >  1:36057/1‑125 (MQ=255)                                                                                                                            gcgcTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAGGGAAAGTTATTTAAt               <  2:384010/150‑1 (MQ=255)                                                                                                                                     gAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGAAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAAGGAAAGTTATTTAATTGAAGAACa      >  1:436976/1‑150 (MQ=255)                                                                                                                                      aaTGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAGGGAAAGTTATTTAATTGAAGAACAt     >  2:783125/1‑150 (MQ=255)                                                                                                                                        tGCAGCCGCCAAGCTTCAAAAAGTTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAGGGAAAGTTATTTAATTGAAGAACATGc   <  1:664538/150‑1 (MQ=255)                                                                                                                                         caaatacaCGAGCTTCACCTTTGTGAAGCTGGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAGGGAAAGTTATTTAATTGAAGAACATGCa  <  1:823516‑M1/142‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                              AGGATATCATGGTGGCATCAGGAGCTCTACGTGGTCTTTAGAGTCTGGCGTTCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAGGGAAAGTTATTTAATTGAAGAACATGCA  >  NC_002947/4817787‑4818072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.