New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4817931 =	30 (0.660)	5 (0.110)	5/246	NT	14.5%	coding (582/795 nt)	PP_4242	conserved protein of unknown function with Rhs repeat‑associated core domain
	?	NC_002947	4817955 =	29 (0.650)					coding (606/795 nt)	PP_4242	conserved protein of unknown function with Rhs repeat‑associated core domain

CTACGTGGTCTTTAGAGTCTGGCGTTCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAGGGAAAGTTATTTAATTGAAGAACATGCATTTACTAATATTCGAGTACGACG  >  NC_002947/4817813‑4818095                                                                                                                                               |                                                                                                                                             tgcatgttcttcaattaaataactttccctggttgcctcatttttcccatcccatatttttttgatcttgcccgcagccacaagcacatcgaaatccttgatgtacacaccaaatacaccagcttcacaaaggtgaagctcgTGTATTTg                                                                                                                                       <  1:823516‑M2/8‑1 (MQ=255) ctACGTGGTCTTTAGAGTCTGGCGTTCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTg                                                                                                                                       >  1:425173/1‑150 (MQ=255)    cGTGGTCTTTAGAGTCTGGCGTTCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGgtg                                                                                                                                    >  1:384010/1‑150 (MQ=255)       ggTCTTTAGAGTCTGGCGTTCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAATTATGGCGTGGCTGAGCTCTATGCGAATGCAGCCGCCAAACTTCACAAAGGTGAAGCTCGTGTATTTGgtgttt                                                                                                                                 >  2:3323/1‑148 (MQ=255)          cTTTAGAGTCTGGCGTTCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGACTGCCGCCGCCAGCCTGTATAAAAGGGAAGCTCTTGTATTTGGTGTGTACa                                                                                                                              >  2:11150/1‑150 (MQ=255)              agagTCTGGCGTTCAGCCCCAGCGACATCAAATTGTTGATCGGGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCaa                                                                                                                          <  1:11150/150‑1 (MQ=255)                    tGGCGTTCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGGCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGAttt                                                                                                                    >  1:46053/1‑150 (MQ=255)                        gTTCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGAt                                                                                                                >  1:1060285/1‑150 (MQ=255)                         ttCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGAtg                                                                                                               <  1:766800/150‑1 (MQ=255)                            cctggttgcctcatttttcccatcccatatttttttgatcttgcccgcagccacaagcacatcgaaatccttgatgtacacaccaaatacacaagcttcacaaaggtgaagctcgTGTATTTGGTGTGTACATCAAGGATTTCGATGTGc                                                                                                            <  1:388592‑M2/35‑1 (MQ=255)                                ccAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTtgt                                                                                                        >  2:995785/1‑150 (MQ=255)                                                             aGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTtgt                                                                                                        >  2:155985/1‑121 (MQ=255)                                                             aGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTtgt                                                                                                        <  1:155985/121‑1 (MQ=255)                                                               gggTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCgtgt                                                                                                                                            <  1:312940/83‑1 (MQ=255)                                                               gggTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCgtgt                                                                                                                                            >  2:312940/1‑83 (MQ=255)                                                                  ttttattttaCACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGGTtgt                                                                                                        >  1:969483/1‑116 (MQ=255)                                                                  ttttattttaCACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTtgt                                                                                                        <  2:969483/116‑1 (MQ=255)                                                                  ttttattttaCACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATatgggatggg                                                                      >  1:864442/1‑150 (MQ=255)                                                                  ttttattttaCACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATatgggatggg                                                                      >  1:963080/1‑150 (MQ=255)                                                                   tttattttaCACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGATTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATAtgggatggga                                                                     <  2:425173/150‑1 (MQ=255)                                                                    ttattttaCACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGaa                                                                    >  2:664538/1‑150 (MQ=255)                                                                       ttttaCACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCtt                                                                                                          <  2:952522/109‑1 (MQ=255)                                                                       ttttaCACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCtt                                                                                                          >  1:952522/1‑109 (MQ=255)                                                                          taCACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGa                                                              <  2:1060285/150‑1 (MQ=255)                                                                               cacaagcacatcgaaatccttgatgtacacaccaaatacacaagcttcacaaaggtgaagctcgTGTATTTGGTGTGTACATCAAGGATTTCGAt                                                                                                                >  1:717849‑M2/65‑95 (MQ=255)                                                                               cacaagcacatcgaaatccttgatgtacacaccaaatacacaagcttcacaaaggtgaagctcgTGTATTTGGTGTGTACATCAAGGATTTCGAt                                                                                                                <  2:717849‑M2/31‑1 (MQ=255)                                                                                    gcacatcgaaatccttgatgtacacaccaaatacaCGAGCTTCACCTTTGTGAAGCTTGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAgg                                                    <  1:388592‑M1/115‑1 (MQ=255)                                                                                        atcgaaatccttgatgtacacaccaaatacaCGAGCTTCACCTTTGTGAAGCTTGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTtgtg                                                                                                       >  1:717849‑M1/32‑95 (MQ=255)                                                                                        atcgaaatccttgatgtacacaccaaatacaCGAGCTTCACCTTTGTGAAGCTTGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTtgtg                                                                                                       <  2:717849‑M1/64‑1 (MQ=255)                                                                                              ccGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGaaa                                                                   <  2:36057/125‑1 (MQ=255)                                                                                              ccGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGaaa                                                                   >  1:36057/1‑125 (MQ=255)                                                                                                  gcgcTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAGGGAAAGTTATTTAAt                                      <  2:384010/150‑1 (MQ=255)                                                                                                           gAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGAAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAAGGAAAGTTATTTAATTGAAGAACa                             >  1:436976/1‑150 (MQ=255)                                                                                                            aaTGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAGGGAAAGTTATTTAATTGAAGAACAt                            >  2:783125/1‑150 (MQ=255)                                                                                                              tGCAGCCGCCAAGCTTCAAAAAGTTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAGGGAAAGTTATTTAATTGAAGAACATGc                          <  1:664538/150‑1 (MQ=255)                                                                                                               caaatacaCGAGCTTCACCTTTGTGAAGCTGGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAGGGAAAGTTATTTAATTGAAGAACATGCa                         <  1:823516‑M1/142‑1 (MQ=255)                                                                                                                                 ctttgtgaagcttgTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAGGGAAAGTTATTTAATTGAAGAACATGCATTTACTAATATTCGAGTa       <  2:823516‑M2/136‑1 (MQ=255)                                                                                                                                 aaaGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCtt                                                                                                          <  2:58350/51‑1 (MQ=255)                                                                                                                                 aaaGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCtt                                                                                                          >  1:58350/1‑51 (MQ=255)                                                                                                                                 aaaGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGTGATGGGAAAAATGAGGCAACCAGGGAAAGTTATTTAATTGAAGAACATGCATTTACTAATATTCGAGTa       <  1:995785/150‑1 (MQ=255)                                                                                                                                          gCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAGGGAAAGTTATTTAATTGAAGAACATg                           <  1:817358/121‑1 (MQ=255)                                                                                                                                          gCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAGGGAAAGTTATTTAATTGAAGAACATg                           >  2:817358/1‑121 (MQ=255)                                                                                                                                           cTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAGGGAAAGTTATTTAATTGAAGAACATGCATTTACTAATATTCGAGTacgacg  <  1:568747/145‑1 (MQ=255)                                                                                                                                           cTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAGGGAAAGTTATTTAATTGAAGAACATGCATTTACTAATATTCGAGTacgacg  >  2:568747/1‑145 (MQ=255)                                                                                                                                               |                                                                                                                                             CTACGTGGTCTTTAGAGTCTGGCGTTCAGCCCCAGCGACATCAAATTGTTGATCATGGGCAGGGGTTTTATTTTACACGCAACTATGGCGTGGCCGAGCGCTATGCGAATGCAGCCGCCAAGCTTCACAAAGGTGAAGCTCGTGTATTTGGTGTGTACATCAAGGATTTCGATGTGCTTGTGGCTGCGGGCAAGATCAAAAAAATATGGGATGGGAAAAATGAGGCAACCAGGGAAAGTTATTTAATTGAAGAACATGCATTTACTAATATTCGAGTACGACG  >  NC_002947/4817813‑4818095

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.