New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5158987 =	47 (1.040)	3 (0.070)	3/238	NT	6.1%	coding (1035/1833 nt)	PP_4542	ABC transporter ATP‑binding protein/permease
	?	NC_002947	5159052 =	48 (1.110)					coding (1100/1833 nt)	PP_4542	ABC transporter ATP‑binding protein/permease

TGATCACCGTGGGTGCCATCGCCCTGGCCACTGGCCTGGTGATCCGCATCGTCAACATGTCGGGCTGGATCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGA  >  NC_002947/5158839‑5159132                                                                                                                                                     |                                                                                                                                                  tGATCACCGTGGGTGCCATCGCCCTGGCCACTGGCCTGGTGATCCGCATCGTCAACATGTCGGGCTGGATCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGgtcaccg                                                                                                                                                  >  1:71545/1‑150 (MQ=255) ccctgcacgtcgtacagacgcaacagcaggttgaccagagtcgacttgcctgccccggacgggccgatcaaaccgattttctcacccgggcggatgtccaggttgagcccttctatgacattggtggccttgccgtaatggaagtcgaCg                                                                                                                                                  <  1:770951‑M1/2‑1 (MQ=255)      aCCGTGGGTGCCATCGCCCTGGCCACTGGCCTGGTGATCCGCATCGTCAACATGTCGGGCTGGATCATGTGGGTGTTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGgtcaccgtcacc                                                                                                                                             >  1:80091/1‑150 (MQ=255)       ccGTGGGTGCCATCGCCCTGGCCACTGGCCTGGTGATCCGCATCGTCAACATGTCGGGCTGGATCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGtcaccgtcaccg                                                                                                                                            <  2:80091/150‑1 (MQ=255)              tGCCATCGCCCTGGCCACTGGCCTGGTGATCCGCATCGTCAACATGTCGGGCTGGATCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGcc                                                                                                                                     <  1:187006/150‑1 (MQ=255)              tGCCATCGCCCTGGCCACTGGCCTGGTGATCCGCATCGTCAACATGTCGAGCTGGATCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGcc                                                                                                                                     <  1:186556/150‑1 (MQ=255)                  aTCGCCCTGGCCACTGGCCTGGTGATCCGCATCGTCAACATGTCGGGCTGGATCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAAt                                                                                                                                 <  1:742736/150‑1 (MQ=255)                      cccTGGCCACTGGCCTGGTGATCCGCATCGTCAACATGTCGGGCTGGATCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATgcgc                                                                                                                             <  2:665032/150‑1 (MQ=255)                                    cagagtcgacttgcctgccccggacgggccgatcaaaccgattttctcacccgggcggatgtccaggttgagcccttctatgacattggtggccttgccgtaatggaagtcgaCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTc                                                                                                               <  1:1100316‑M1/37‑1 (MQ=255)                                              gCATCGTCAACATGTCGGGCTGGATCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCcgcggcg                                                                                                     >  1:972072/1‑150 (MQ=255)                                              gCATCGTCAACATGTCGGGCTGGATCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCcgcggcg                                                                                                     >  1:65873/1‑150 (MQ=255)                                                 cctgccccggacgggccgatcaaaccgattttctcacccgggcggatgtccaggttgagcccttctatgacattggtggccttgccgtaatggaagtcgaCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCcgcggcgcgg                                                                                                  >  2:1182517‑M1/101‑150 (MQ=255)                                                   gTCAACATGTCGGGCTGGATCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTg                                                                                                >  1:464086/1‑150 (MQ=255)                                                    tCAACATGTCGGGCTGGATCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGc                                                                                               >  2:230893/1‑150 (MQ=255)                                                            tCGGGCTGGATCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGtt                                                                                       <  1:721931/150‑1 (MQ=255)                                                            cgggccgatcaaaccgattttctcacccgggcggatgtccaggttgagcccttctatgacattggtggccttgccgtaatggaagtcgaCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGtt                                                                                       >  2:1100316‑M1/90‑150 (MQ=255)                                                              gggCTGGATCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGa                                                                                     <  2:326787/150‑1 (MQ=255)                                                                 cTGGATCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGt                                                                                  >  2:518764/1‑150 (MQ=255)                                                                      tCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACt                                                                             <  2:570513/150‑1 (MQ=255)                                                                         tgtgGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTcc                                                                          <  1:647311/150‑1 (MQ=255)                                                                                  tCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCa                                                                 >  1:607811/1‑150 (MQ=255)                                                                                   cAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCaa                                                                <  2:464086/150‑1 (MQ=255)                                                                                    aaCGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAg                                                               >  1:283749/1‑150 (MQ=255)                                                                                    aaCGACATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAg                                                               <  2:65873/150‑1 (MQ=255)                                                                                        gCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGcca                                                           <  1:397252/150‑1 (MQ=255)                                                                                          aTCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGccacc                                                         >  2:669711/1‑150 (MQ=255)                                                                                             ttCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAAt                                                      <  1:156352/150‑1 (MQ=255)                                                                                             ttCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAAt                                                      >  2:310259/1‑150 (MQ=255)                                                                                                gagaACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTc                                                   >  2:770951/1‑150 (MQ=255)                                                                                                gagaACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTc                                                   >  2:958862/1‑150 (MQ=255)                                                                                                     cATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGa                                              >  2:257147/1‑150 (MQ=255)                                                                                                      aTCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGcc                                                                                                                            <  2:99801/71‑1 (MQ=255)                                                                                                      aTCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGcc                                                                                                                            >  1:99801/1‑71 (MQ=255)                                                                                                      aTCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGaa                                             >  1:1133092/1‑150 (MQ=255)                                                                                                      aTCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGaa                                             <  2:795874/150‑1 (MQ=255)                                                                                                      aTCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGaa                                             >  1:795874/1‑150 (MQ=255)                                                                                                            aTGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTc                                       <  1:310259/150‑1 (MQ=255)                                                                                                              ggTGCAGGACGGCCTGCAGACTCTCGCCCAGCCGGTGACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCaa                                     <  2:71545/150‑1 (MQ=255)                                                                                                                tGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAAcc                                   >  2:700279/1‑150 (MQ=255)                                                                                                                  cAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACATg                                 <  2:607811/150‑1 (MQ=255)                                                                                                                    ggACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGa                               <  1:257147/150‑1 (MQ=255)                                                                                                                     gACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATga                                                                                                                               <  2:293692/53‑2 (MQ=255)                                                                                                                     gACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATga                                                                                                                               >  1:293692/1‑52 (MQ=255)                                                                                                                      aCGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACa                             <  2:385444/150‑1 (MQ=255)                                                                                                                         gCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATcc                          <  2:1133092/150‑1 (MQ=255)                                                                                                                                 aCCATCGCCCAGCCGGTCACCGTCACCGAACCGCCTTCTGCTACGGTGCTCTATGTCACCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGt                  <  2:919258/150‑1 (MQ=255)                                                                                                                                    aTCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAggg                                          <  1:150068/123‑1 (MQ=255)                                                                                                                                    aTCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAggg                                          >  2:150068/1‑123 (MQ=255)                                                                                                                                        cccAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGaaaa           >  2:1081433/1‑150 (MQ=255)                                                                                                                                         ccAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAAc                                    >  2:108155/1‑124 (MQ=255)                                                                                                                                         ccAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAAc                                    <  1:108155/124‑1 (MQ=255)                                                                                                                                              cGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGtt     <  2:283749/150‑1 (MQ=255)                                                                                                                                                gtcaccgtcaccGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATa                                                >  1:507342/1‑105 (MQ=255)                                                                                                                                                gtcaccgtcaccGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATa                                                <  2:507342/105‑1 (MQ=255)                                                                                                                                                 tcaccgtcaccgACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGa  >  1:546974/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                  TGATCACCGTGGGTGCCATCGCCCTGGCCACTGGCCTGGTGATCCGCATCGTCAACATGTCGGGCTGGATCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGA  >  NC_002947/5158839‑5159132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.