New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5158987 =	47 (1.040)	3 (0.070)	3/238	NT	6.1%	coding (1035/1833 nt)	PP_4542	ABC transporter ATP‑binding protein/permease
	?	NC_002947	5159052 =	48 (1.110)					coding (1100/1833 nt)	PP_4542	ABC transporter ATP‑binding protein/permease

CTGGATCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCGGCCCGTCCGGGGCAGGCAAGTCGACTCTGGTCAACCTGCTGTTGCGTCTGTACGACGTGCAGGG  >  NC_002947/5158903‑5159199                                                                                                                                                      |                                                                                                                                                    cTGGATCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGt                                                                                                                                                     >  2:518764/1‑150 (MQ=255)      tCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACt                                                                                                                                                <  2:570513/150‑1 (MQ=255)         tgtgGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTcc                                                                                                                                             <  1:647311/150‑1 (MQ=255)                  tCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCa                                                                                                                                    >  1:607811/1‑150 (MQ=255)                   cAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCaa                                                                                                                                   <  2:464086/150‑1 (MQ=255)                    aaCGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAg                                                                                                                                  >  1:283749/1‑150 (MQ=255)                    aaCGACATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAg                                                                                                                                  <  2:65873/150‑1 (MQ=255)                        gCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGcca                                                                                                                              <  1:397252/150‑1 (MQ=255)                          aTCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGccacc                                                                                                                            >  2:669711/1‑150 (MQ=255)                             ttCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAAt                                                                                                                         >  2:310259/1‑150 (MQ=255)                             ttCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAAt                                                                                                                         <  1:156352/150‑1 (MQ=255)                                gagaACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTc                                                                                                                      >  2:958862/1‑150 (MQ=255)                                gagaACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTc                                                                                                                      >  2:770951/1‑150 (MQ=255)                                     cATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGa                                                                                                                 >  2:257147/1‑150 (MQ=255)                                      aTCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGaa                                                                                                                <  2:795874/150‑1 (MQ=255)                                      aTCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGaa                                                                                                                >  1:1133092/1‑150 (MQ=255)                                      aTCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGaa                                                                                                                >  1:795874/1‑150 (MQ=255)                                            aTGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTc                                                                                                          <  1:310259/150‑1 (MQ=255)                                              ggTGCAGGACGGCCTGCAGACTCTCGCCCAGCCGGTGACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCaa                                                                                                        <  2:71545/150‑1 (MQ=255)                                                tGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAAcc                                                                                                      >  2:700279/1‑150 (MQ=255)                                                  cAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACATg                                                                                                    <  2:607811/150‑1 (MQ=255)                                                    ggACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGa                                                                                                  <  1:257147/150‑1 (MQ=255)                                                      aCGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACa                                                                                                <  2:385444/150‑1 (MQ=255)                                                         gCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATcc                                                                                             <  2:1133092/150‑1 (MQ=255)                                                                 aCCATCGCCCAGCCGGTCACCGTCACCGAACCGCCTTCTGCTACGGTGCTCTATGTCACCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGt                                                                                     <  2:919258/150‑1 (MQ=255)                                                                    aTCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAggg                                                                                                             <  1:150068/123‑1 (MQ=255)                                                                    aTCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAggg                                                                                                             >  2:150068/1‑123 (MQ=255)                                                                        cccAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGaaaa                                                                              >  2:1081433/1‑150 (MQ=255)                                                                         ccAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAAc                                                                                                       <  1:108155/124‑1 (MQ=255)                                                                         ccAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAAc                                                                                                       >  2:108155/1‑124 (MQ=255)                                                                              cGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGtt                                                                        <  2:283749/150‑1 (MQ=255)                                                                                gtcaccgtcaccGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATa                                                                                                                   <  2:507342/105‑1 (MQ=255)                                                                                gtcaccgtcaccGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATa                                                                                                                   >  1:507342/1‑105 (MQ=255)                                                                                 tcaccgtcaccgACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGa                                                                     >  1:546974/1‑150 (MQ=255)                                                                                       TCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCg                                                                           <  2:610400‑M1/138‑1 (MQ=255)                                                                                       TCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCg                                                                           >  1:610400‑M1/1‑138 (MQ=255)                                                                                         aacgaaacgcaccgcgccgcggctgaccttcagggccggcgcattgggcgggtcggtgacgTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCGGCCCg                                                             >  2:1100316‑M2/62‑150 (MQ=255)                                                                                               ccGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCgg                                                                 <  2:811282/140‑1 (MQ=255)                                                                                               ccGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCgg                                                                 >  1:811282/1‑140 (MQ=255)                                                                                                cGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCGGCCCGTCCgggg                                                      >  1:355719/1‑150 (MQ=255)                                                                                                 gCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCGGCCCGTCCGGggc                                                     <  1:1081433/150‑1 (MQ=255)                                                                                                 gCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCAATTACg                                                                                                                                       >  2:47607/1‑68 (MQ=255)                                                                                                 gCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCAATTACg                                                                                                                                       <  1:47607/68‑1 (MQ=255)                                                                                                  cccAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCGGCCCGTCCGGggca                                                    <  1:669711/150‑1 (MQ=255)                                                                                                   ccAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCGGCCCGTCCGGggcag                                                   <  1:958862/150‑1 (MQ=255)                                                                                                    ccgcgccgcggctgaccttcagggccggcgcattgggcgggtcggtgacgTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCGGCCCGTCCGGggcagg                                                  >  2:1182517‑M2/51‑150 (MQ=255)                                                                                                    cAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCGGCCCGTCCGGggcagg                                                  <  1:518764/150‑1 (MQ=255)                                                                                                                ccTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCGGCCCGTCCGGGGCAGGCAAGTCGActct                                      >  2:312216/1‑150 (MQ=255)                                                                                                                 gaccttcagggccggcgcattgggcgggtcggtgacgTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCGGCCCGTCCGGGGCAGGCAAGTCGACTCTg                                     <  1:1100316‑M2/113‑1 (MQ=255)                                                                                                                  tGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCGGCCCGTCCGGGGCAGGCAAGTCGACTCTgg                                    >  2:985307/1‑150 (MQ=255)                                                                                                                       gTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCGGCCCGTCCGGGGCAGGCAAGTCGACTCTGGTCAAc                               <  2:546974/150‑1 (MQ=255)                                                                                                                                     ggTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCGGCCCGTCCGGGGCAGGCAAGTCGACTCTGGTCAACCTGCTGTTGCGTCt                 <  1:230893/150‑1 (MQ=255)                                                                                                                                         cGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCGGCCCGTCCGGGGCAGGCAAGTCGACTCTGGTCAACCTGCTGTTGCGTCTGTac             >  1:1061941/1‑150 (MQ=255)                                                                                                                                           tttCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCGGCCCGTCCGGGGCAGGCAAGTCGACTCTGGTCAACCTGCTGTTGCGTCTGTacga           >  2:533578/1‑150 (MQ=255)                                                                                                                                                ttGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCg                                                                           <  1:979060/81‑1 (MQ=255)                                                                                                                                                ttGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCg                                                                           >  2:979060/1‑81 (MQ=255)                                                                                                                                                    cgTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCGGCCCGTCCGGGGCAGGCAAGTCGACTCTGGTCAACCTGCTGTTGCGTCTGTACGACGTGCAggg  <  1:770951‑M2/148‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    CTGGATCATGTGGGTGGTCAACGGCATCTTCGAGAACATCGGCATGGTGCAGGACGGCCTGCAGACCATCGCCCAGCCGGTCACCGTCACCGACCCGCCCAATGCGCCGGCCCTGAAGGTCAGCCGCGGCGCGGTGCGTTTCGTTGACGTCGACTTCCATTACGGCAAGGCCACCAATGTCATAGAAGGGCTCAACCTGGACATCCGCCCGGGTGAGAAAATCGGTTTGATCGGCCCGTCCGGGGCAGGCAAGTCGACTCTGGTCAACCTGCTGTTGCGTCTGTACGACGTGCAGGG  >  NC_002947/5158903‑5159199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.