New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5450922	40 (0.890)	4 (0.090)	4/234	NT	8.7%	coding (253/840 nt)	corC	Co(2+)/Mg(2+)efflux heat shock protein
	?	NC_002947	= 5450949	46 (1.080)					coding (280/840 nt)	corC	Co(2+)/Mg(2+)efflux heat shock protein

TGCGCGAAGCCCATCAGAACAAATTGCTGGACAGCGAAGCGCTGACCATCGTCGAAGGCGCCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGACCTG  >  NC_002947/5450773‑5451068                                                                                                                                                      |                                                                                                                                                   tgcGCGAAGCCCATCAGAACAAATTGCTGGACAGCGAAGCGCTGACCATCGTCGAAGGCGCCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGT                                                                                                                                                    >  1:414917‑M1/1‑150 (MQ=255)     cgAAGCCCATCAGAACAAATTGCTGGACAGCGAAGCGCTGACCATCGTCGAAGGCGCCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCt                                                                                                                                                <  1:685298/150‑1 (MQ=255)      gAAGCCCATCAGAACAAATTGCTGGACAGCGAAGCGCTGACCATCGTCGAAGGCGCCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTg                                                                                                                                               >  1:1171365/1‑150 (MQ=255)                     aaaTTGCTGGACAGCGAAGCGCTGACCATCGTCGAAGGCGCCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGAc                                                                                                                                >  1:941717/1‑150 (MQ=255)                                cAGCGAAGCGCTGACCATCGTCGAAGGCGCCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGAGCactc                                                                                                                     <  1:583170‑M2/150‑5 (MQ=255)                                    gAAGCGCTGACCATCGTCGAAGGCGCCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCgcgc                                                                                                                 >  2:27742/1‑150 (MQ=255)                                     aaGCGCTGACCATCGTCGAAGGCGCCATTCAGGTCGCCGACCTGTATGCTTGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTgcgcggcgtcgatcaccgccggcaggaactcgcgag                                                                                                                <  1:734123‑M1/150‑37 (MQ=255)                                       gcgcTGACCATCGTCGAAGGCGCCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTgcgcggcgtcgatcaccgccggcaggaactcgcgaggc                                                                                                              <  2:1160605‑M1/150‑39 (MQ=255)                                                    tcgAAGGCGCCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCg                                                                                                 >  1:111521/1‑150 (MQ=255)                                                          gcgcCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTg                                                                                                                                               >  2:849492/1‑98 (MQ=255)                                                          gcgcCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTg                                                                                                                                               <  1:849492/98‑1 (MQ=255)                                                          gcgcCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGcc                                                                                           >  1:345674/1‑150 (MQ=255)                                                          gcgcCATTATGGGCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGcc                                                                                           <  2:936421/150‑1 (MQ=255)                                                               aTTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGAc                                                                                      >  1:1032023/1‑150 (MQ=255)                                                                   aGGTCGCCGACCTGCAAGTTCGCGACATTATGGTGCCGCGTTCGCAGATGAAAAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTTCTGCCGGCGGTGATCGACGCCGCGCACTCGCGATACCCGGTAATCGGCGCAAGCCCTGACGAtg                                                                                  >  2:236646/1‑150 (MQ=255)                                                                   aGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGAtg                                                                                  <  2:111521/150‑1 (MQ=255)                                                                      tCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTcga                                                                                                                                                <  2:665259/85‑3 (MQ=255)                                                                      tCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCAGGCCAGTCGCCTCGCGAGTTcga                                                                                                                                                >  1:665259/1‑83 (MQ=255)                                                                          cGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCgg                                                                           >  1:339065/1‑150 (MQ=255)                                                                           gACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTgcgcggcgtcgatcaccgccggcaggaactcgcga                                                                                                                 >  1:1193866‑M1/1‑76 (MQ=255)                                                                           gACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTgcgcggcgtcgatcaccgccggcaggaactcgcga                                                                                                                 <  2:1193866‑M1/111‑36 (MQ=255)                                                                            aCCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGaaa                                                                                              <  2:476427/129‑1 (MQ=255)                                                                            aCCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGaaa                                                                                              >  1:476427/1‑129 (MQ=255)                                                                              cTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCcggcgg                                                                                                                                        <  1:1097831/85‑1 (MQ=255)                                                                              cTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCcggcgg                                                                                                                                        >  2:1097831/1‑85 (MQ=255)                                                                              cTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATc                                                                       <  1:721181/150‑1 (MQ=255)                                                                               tGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGGTGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCAt                                                                                         >  2:667376/1‑131 (MQ=255)                                                                               tGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCAt                                                                                         <  1:667376/131‑1 (MQ=255)                                                                                 cAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCactcgc                                                                                                                   >  2:155611‑M2/1‑97 (MQ=255)                                                                                 cAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCactcgc                                                                                                                   <  1:155611‑M2/103‑7 (MQ=255)                                                                                 cAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTg                                                                    <  1:726060/150‑1 (MQ=255)                                                                                 cAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTg                                                                    >  1:1011246/1‑150 (MQ=255)                                                                                     ttCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCg                                                                >  1:899816/1‑150 (MQ=255)                                                                                     ctCGCGACATCATGGTTCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCCCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCg                                                                <  2:546236/149‑1 (MQ=255)                                                                                        gcgACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCa                                                             >  2:563435/1‑150 (MQ=255)                                                                                          gACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCaaa                                                           <  2:991805/150‑1 (MQ=255)                                                                                               catGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACtt                                                      <  1:27742/150‑1 (MQ=255)                                                                                                   gTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTtgctg                                                  >  2:27463/1‑150 (MQ=255)                                                                                                      ccGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTtgc                                                    <  2:602254/145‑1 (MQ=255)                                                                                                      ccGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTtgc                                                    >  1:602254/1‑145 (MQ=255)                                                                                                        gcgTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGtt                                             <  2:345674/150‑1 (MQ=255)                                                                                                                 gATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCaa                                    <  2:899816/150‑1 (MQ=255)                                                                                                                  aTGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAg                                   <  2:941717/150‑1 (MQ=255)                                                                                                                  aTGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAg                                   <  1:27463/150‑1 (MQ=255)                                                                                                                    gAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGga                                 >  2:625496/1‑150 (MQ=255)                                                                                                                          cATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGACCCACTCCAGGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACgg                           >  1:380193/1‑150 (MQ=255)                                                                                                                             cAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGa                        <  2:414917/150‑1 (MQ=255)                                                                                                                                ggccggccAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCg                                                                                                    >  2:211509/1‑71 (MQ=255)                                                                                                                                ggccggccAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCg                                                                                                    <  1:211509/71‑1 (MQ=255)                                                                                                                                  ccggccAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCg                                               >  2:301621/1‑122 (MQ=255)                                                                                                                                  ccggccAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCg                                               <  1:301621/122‑1 (MQ=255)                                                                                                                                    ggccAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGAGCACTAGCGCTACCACCACCCAGATCAAAGCCAGCAAGATGTACGCGGGACACTGCCAGAATAAGACCTTCTACCGTTGATCCTCAAGGAGAACGGCGACAGCTTc                 <  1:574800/150‑1 (MQ=255)                                                                                                                                            gCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCactcgcgaggcgactggccggccttgatgctgttcatctgcgaacgcggcaccatgatgtcgcgaacttgcaggtcggcgacctgaatggcgccttcgacgatggtcagcgc         <  2:1160605‑M2/150‑113 (MQ=255)                                                                                                                                              cTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCactcgcgaggcgactggccggccttgatgctgttcatctgcgaacgcggcaccatgatgtcgcaagcatacaggtcggcgacctgaatggcgccttcgacgatggtcagcgctt       <  1:734123‑M2/150‑115 (MQ=255)                                                                                                                                               tCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCactcgcgaggcgactggccggccttgatgctgttcatctgcgaacgcggcaccatgatgtcgcgaacttgcaggtc                                             <  2:1193866‑M2/111‑77 (MQ=255)                                                                                                                                               tCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCactcgcgaggcgactggccggccttgatgctgttcatctgcgaacgcggcaccatgatgtcgcgaacttgcaggtc                                             >  1:1193866‑M2/1‑35 (MQ=255)                                                                                                                                                cgcgAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGAc     <  2:1032023/150‑1 (MQ=255)                                                                                                                                                cgcgAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGAc     <  1:45113/150‑1 (MQ=255)                                                                                                                                                 gcgAGTgcgcggcgtcgatcaccgccggcaggaactcgcgaggcgactggccggccttgatgctgttcatctgcgaacgcggcaccatgatgtcgcgaacttg                                                   >  2:155611‑M1/1‑6 (MQ=255)                                                                                                                                                 gcgAGTgcgcggcgtcgatcaccgccggcaggaactcgcgaggcgactggccggccttgatgctgttcatctgcgaacgcggcaccatgatgtcgcgaacttg                                                   <  1:155611‑M1/103‑98 (MQ=255)                                                                                                                                                   gAGTgctcggcgtcgatcaccgccggcaggaactcgcgaggcgactggccggccttgatgctgttcatctgcgaacgcggcaccatgatgtcgcgaacttgcaggtcggcgacctgaatggcgccttcgacgatggtcagcgcttcgctg  <  1:583170‑M1/150‑147 (MQ=255)                                                                                                                                                      |                                                                                                                                                   TGCGCGAAGCCCATCAGAACAAATTGCTGGACAGCGAAGCGCTGACCATCGTCGAAGGCGCCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGACCTG  >  NC_002947/5450773‑5451068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.