New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5450922	40 (0.890)	4 (0.090)	4/234	NT	8.7%	coding (253/840 nt)	corC	Co(2+)/Mg(2+)efflux heat shock protein
	?	NC_002947	= 5450949	46 (1.080)					coding (280/840 nt)	corC	Co(2+)/Mg(2+)efflux heat shock protein

CAGCGAAGCGCTGACCATCGTCGAAGGCGCCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGACCTGCTGCGCCCGGCCACCTTCGTGCCCGAGT  >  NC_002947/5450804‑5451096                                                                                                                                                  |                                                                                                                                                    cAGCGAAGCGCTGACCATCGTCGAAGGCGCCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGAGCactc                                                                                                                                                 <  1:583170‑M2/150‑5 (MQ=255)     gAAGCGCTGACCATCGTCGAAGGCGCCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCgcgc                                                                                                                                             >  2:27742/1‑150 (MQ=255)                     tcgAAGGCGCCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCg                                                                                                                             >  1:111521/1‑150 (MQ=255)                           gcgcCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGcc                                                                                                                       >  1:345674/1‑150 (MQ=255)                           gcgcCATTATGGGCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGcc                                                                                                                       <  2:936421/150‑1 (MQ=255)                                aTTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGAc                                                                                                                  >  1:1032023/1‑150 (MQ=255)                                    aGGTCGCCGACCTGCAAGTTCGCGACATTATGGTGCCGCGTTCGCAGATGAAAAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTTCTGCCGGCGGTGATCGACGCCGCGCACTCGCGATACCCGGTAATCGGCGCAAGCCCTGACGAtg                                                                                                              >  2:236646/1‑150 (MQ=255)                                    aGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGAtg                                                                                                              <  2:111521/150‑1 (MQ=255)                                           cGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCgg                                                                                                       >  1:339065/1‑150 (MQ=255)                                             aCCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGaaa                                                                                                                          <  2:476427/129‑1 (MQ=255)                                             aCCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGaaa                                                                                                                          >  1:476427/1‑129 (MQ=255)                                               cTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATc                                                                                                   <  1:721181/150‑1 (MQ=255)                                                tGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGGTGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCAt                                                                                                                     >  2:667376/1‑131 (MQ=255)                                                tGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCAt                                                                                                                     <  1:667376/131‑1 (MQ=255)                                                  cAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCactcgc                                                                                                                                               <  1:155611‑M2/103‑7 (MQ=255)                                                  cAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCactcgc                                                                                                                                               >  2:155611‑M2/1‑97 (MQ=255)                                                  cAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTg                                                                                                >  1:1011246/1‑150 (MQ=255)                                                  cAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTg                                                                                                <  1:726060/150‑1 (MQ=255)                                                      ttCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCg                                                                                            >  1:899816/1‑150 (MQ=255)                                                      ctCGCGACATCATGGTTCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCCCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCg                                                                                            <  2:546236/149‑1 (MQ=255)                                                         gcgACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCa                                                                                         >  2:563435/1‑150 (MQ=255)                                                           gACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCaaa                                                                                       <  2:991805/150‑1 (MQ=255)                                                                catGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACtt                                                                                  <  1:27742/150‑1 (MQ=255)                                                                    gTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTtgctg                                                                              >  2:27463/1‑150 (MQ=255)                                                                       ccGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTtgc                                                                                >  1:602254/1‑145 (MQ=255)                                                                       ccGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTtgc                                                                                <  2:602254/145‑1 (MQ=255)                                                                         gcgTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGtt                                                                         <  2:345674/150‑1 (MQ=255)                                                                                  gATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCaa                                                                <  2:899816/150‑1 (MQ=255)                                                                                   aTGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAg                                                               <  2:941717/150‑1 (MQ=255)                                                                                   aTGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAg                                                               <  1:27463/150‑1 (MQ=255)                                                                                     gAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGga                                                             >  2:625496/1‑150 (MQ=255)                                                                                           cATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGACCCACTCCAGGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACgg                                                       >  1:380193/1‑150 (MQ=255)                                                                                              cAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGa                                                    <  2:414917/150‑1 (MQ=255)                                                                                                 ggccggccAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCg                                                                                                                                <  1:211509/71‑1 (MQ=255)                                                                                                 ggccggccAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCg                                                                                                                                >  2:211509/1‑71 (MQ=255)                                                                                                   ccggccAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCg                                                                           >  2:301621/1‑122 (MQ=255)                                                                                                   ccggccAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCg                                                                           <  1:301621/122‑1 (MQ=255)                                                                                                     ggccAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGAGCACTAGCGCTACCACCACCCAGATCAAAGCCAGCAAGATGTACGCGGGACACTGCCAGAATAAGACCTTCTACCGTTGATCCTCAAGGAGAACGGCGACAGCTTc                                             <  1:574800/150‑1 (MQ=255)                                                                                                             gCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCactcgcgaggcgactggccggccttgatgctgttcatctgcgaacgcggcaccatgatgtcgcgaacttgcaggtcggcgacctgaatggcgccttcgacgatggtcagcgc                                     <  2:1160605‑M2/150‑113 (MQ=255)                                                                                                               cTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCactcgcgaggcgactggccggccttgatgctgttcatctgcgaacgcggcaccatgatgtcgcaagcatacaggtcggcgacctgaatggcgccttcgacgatggtcagcgctt                                   <  1:734123‑M2/150‑115 (MQ=255)                                                                                                                tCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCactcgcgaggcgactggccggccttgatgctgttcatctgcgaacgcggcaccatgatgtcgcgaacttgcaggtc                                                                         >  1:1193866‑M2/1‑35 (MQ=255)                                                                                                                tCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCactcgcgaggcgactggccggccttgatgctgttcatctgcgaacgcggcaccatgatgtcgcgaacttgcaggtc                                                                         <  2:1193866‑M2/111‑77 (MQ=255)                                                                                                                 cgcgAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGAc                                 <  2:1032023/150‑1 (MQ=255)                                                                                                                 cgcgAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGAc                                 <  1:45113/150‑1 (MQ=255)                                                                                                                         ccTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGACCTGCTgcg                         <  2:171712/150‑1 (MQ=255)                                                                                                                           tGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAg                                                               <  1:188397/110‑1 (MQ=255)                                                                                                                           tGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAg                                                               >  2:188397/1‑110 (MQ=255)                                                                                                                           tGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGc                                                      <  2:550962/119‑1 (MQ=255)                                                                                                                           tGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGc                                                      >  1:550962/1‑119 (MQ=255)                                                                                                                                  ggTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGTCGAAAGCAATGACGATGTGCTCGCGTTGACGATTTCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGACCTGCTGCGCCCGGCCAc                <  1:625496/150‑1 (MQ=255)                                                                                                                                  ggTGATCGACGCAGCCCTCACGAGCAAGCCGGTAATCGGCGAAAGCCATGACGATGTGCACGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGACCTGCTGCGCCCGGCCAc                >  2:107198/1‑150 (MQ=255)                                                                                                                                     gATCGAAACCGCGCACTCGCGTGACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTGGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGACCTGCTGCGCCCGGCCACCtt             >  2:380107/1‑150 (MQ=255)                                                                                                                                      aTCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGACCTGCTGCGCCCGGCCACCtgc            <  2:380193/150‑3 (MQ=255)                                                                                                                                        cGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGACCTGCTGCGCCCGGCCACCTTCGt          <  2:339065/150‑1 (MQ=255)                                                                                                                                                cgcACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGACCTGCTGCGCCCGGCCACCTTCGTGCCCGAGt  <  2:1171365/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CAGCGAAGCGCTGACCATCGTCGAAGGCGCCATTCAGGTCGCCGACCTGCAAGTTCGCGACATCATGGTGCCGCGTTCGCAGATGAACAGCATCAAGGCCGGCCAGTCGCCTCGCGAGTTCCTGCCGGCGGTGATCGACGCCGCGCACTCGCGCTACCCGGTAATCGGCGAAAGCCATGACGATGTGCTCGGGATCCTGCTCGCCAAAGACTTGCTGCCGTTGATCCTCAAGGAGAACGGCGACAGCTTCAACATCAAGGACCTGCTGCGCCCGGCCACCTTCGTGCCCGAGT  >  NC_002947/5450804‑5451096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.