New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5792896	37 (0.820)	5 (0.120)	4/234	NT	11.0%	coding (491/1419 nt)	gltD	glutamate synthase subunit beta
	?	NC_002947	= 5792916	46 (1.080)					coding (471/1419 nt)	gltD	glutamate synthase subunit beta

CATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTTCTCCACCGAGCCGATGGTCACCGCGCCGAAACCGTC  >  NC_002947/5792751‑5793044                                                                                                                                                  |                                                                                                                                                     cATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGcc                                                                                                                                                  >  1:796461/1‑150 (MQ=255)     ccGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAgg                                                                                                                                              <  1:1017290/150‑1 (MQ=255)             cacTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCgccgg                                                                                                                                      >  2:113775/1‑150 (MQ=255)                   aCGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCACCGGGCCGgc                                                                                                                                <  2:4604‑M2/150‑3 (MQ=255)                     ggcggTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGgcgc                                                                                                                              <  1:765859‑M2/150‑5 (MQ=255)                         gTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCcggcccggcgggcctgggctgcgccgac                                                                                                                          <  2:529554‑M1/150‑29 (MQ=255)                              tGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATgg                                                                                                                     >  2:572260/1‑150 (MQ=255)                              tGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCACCGGGCCGGCGCCGATGATgg                                                                                                                     <  1:4604/150‑1 (MQ=255)                              tGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCACCAACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATgg                                                                                                                     >  1:73858/1‑150 (MQ=255)                                               aGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTAACGAAGAACTCGGGGCTTGCCCAGGTACTGACCAGCACGTCGGCGCAGCCCCGGCCCGCCGGGCCCGCGCCGATGATGGCAACGCGCTTGCCGGtt                                                                                                    <  1:990919/150‑1 (MQ=255)                                                gCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCcggcccggcgggcctgggctgcgccgac                                                                                                                          >  2:591979‑M1/1‑99 (MQ=255)                                                gCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCcggcccggcgggcctgggctgcgccgac                                                                                                                          <  1:591979‑M1/127‑29 (MQ=255)                                                  ttGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGc                                                                                                 <  2:1094297/150‑1 (MQ=255)                                                   tGAACTCGGGGATACCGAAGGTCAGCAGGCCACCTACTGCAGGGTTCTTGTCGAATACCACCGTTTTTACCCCGGCGCGCACCAGCACGGCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCt                                                                                                <  2:73858/150‑1 (MQ=255)                                                   tGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCt                                                                                                <  2:796461/150‑1 (MQ=255)                                                     aaCTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTg                                                                                              >  2:215415/1‑150 (MQ=255)                                                      aCTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGa                                                                                             <  2:1044312/150‑1 (MQ=255)                                                      aCTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGATTGa                                                                                             >  1:249834/1‑150 (MQ=255)                                                        tCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGAcc                                                                                           >  1:831037/1‑150 (MQ=255)                                                        tCGGGGATACCGAAGGTAAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGgc                                                                                                                                >  2:964861‑M2/1‑111 (MQ=255)                                                        tCGGGGATACCGAAGGTAAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGgc                                                                                                                                <  1:964861‑M2/113‑3 (MQ=255)                                                              aTACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGAc                                                                                     <  1:710065/150‑1 (MQ=255)                                                                  cGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTgg                                                                                                  >  1:1026772/1‑133 (MQ=255)                                                                  cGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTgg                                                                                                  <  2:1026772/133‑1 (MQ=255)                                                                  cGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGt                                                                                 >  2:1093805/1‑150 (MQ=255)                                                                     aGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCg                                                                              <  1:113775/150‑1 (MQ=255)                                                                       gTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGa                                                                            >  1:837111/1‑150 (MQ=255)                                                                                       tctcAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACGAGCGCGTCGGAGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGTCGGTTGGCTTGACCTTGGACATGTCCGGGCGCCAGCCCATGGCGa                                                            >  2:44831/1‑150 (MQ=255)                                                                                         tcAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCcggcccggcgggcctgggctgcgccgacgtg                                                                                                                       <  2:195619‑M1/89‑32 (MQ=255)                                                                                         tcAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCcggcccggcgggcctgggctgcgccgacgtg                                                                                                                       >  1:195619‑M1/1‑58 (MQ=255)                                                                                                  ttGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCg                                                 <  2:837111/150‑1 (MQ=255)                                                                                                  ttGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCg                                                 <  1:83114/150‑1 (MQ=255)                                                                                                            ccaccGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGAc                                                                                            >  2:517244/1‑97 (MQ=255)                                                                                                            ccaccGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGAc                                                                                            <  1:517244/97‑1 (MQ=255)                                                                                                             caccGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACtt                                      >  2:605916/1‑150 (MQ=255)                                                                                                             caccGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACtt                                      >  2:566105/1‑150 (MQ=255)                                                                                                              accGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTa                                         >  2:208577/1‑146 (MQ=255)                                                                                                              accGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTa                                         <  1:208577/146‑1 (MQ=255)                                                                                                              accGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTtc                                     >  2:654766/1‑150 (MQ=255)                                                                                                               ccGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATg                                                                <  1:1025766/122‑1 (MQ=255)                                                                                                               ccGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATg                                                                >  2:1025766/1‑122 (MQ=255)                                                                                                               ccGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTAc                                        >  2:690295/1‑146 (MQ=255)                                                                                                               ccGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTAc                                        <  1:690295/146‑1 (MQ=255)                                                                                                                     ttACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTTCTCCACCg                              >  2:1133468/1‑150 (MQ=255)                                                                                                                         cccGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTTCTCCACCGAGcc                          >  1:815049/1‑150 (MQ=255)                                                                                                                                        cACGTCGGCGCAGCCCAGGCCCGCCGGGCCGgcgccgacgtgctggtgcgcgccggggtaaccccggtggtgttcgacaaaaaccctga                                                                        >  1:195619‑M2/1‑31 (MQ=255)                                                                                                                                        cACGTCGGCGCAGCCCAGGCCCGCCGGGCCGgcgccgacgtgctggtgcgcgccggggtaaccccggtggtgttcgacaaaaaccctga                                                                        <  2:195619‑M2/89‑59 (MQ=255)                                                                                                                                           gTCGGCGCAGCCCAGGCCCGCCGGGCCGgcgccgacgtgctggtgcgcgccggggtaaccccggtggtgttcgacaaaaaccctgagatcggtggcctgctgaccttcggtatccccgagttcaagctggaaaagaccgtgctcagcaac        <  2:529554‑M2/150‑123 (MQ=255)                                                                                                                                           gTCGGCGCAGCCCAGGCCCGCCGGGCCGgcgccgacgtgctggtgcgcgccggggtaaccccggtggtgttcgacaaaaaccctgagatcggtggcctgctgaccttcggtatccccgagttcaagc                               >  2:591979‑M2/1‑28 (MQ=255)                                                                                                                                           gTCGGCGCAGCCCAGGCCCGCCGGGCCGgcgccgacgtgctggtgcgcgccggggtaaccccggtggtgttcgacaaaaaccctgagatcggtggcctgctgaccttcggtatccccgagttcaagc                               <  1:591979‑M2/127‑100 (MQ=255)                                                                                                                                            tCGGCGCCGGCCCGGCGGGCCTGCGCGGCTCCGACGATGACAGCGCGCTTGCGGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCACGGCGAAGGCGGTGTCAGTCATGTACTTCTCCACCGAGCCGATGGTCACCGCGCCGaaa       <  2:396595/150‑1 (MQ=255)                                                                                                                                             cGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTTCTCCACCGAGCCGATGGTCACCGCGCCGAAAc      <  1:572260/150‑1 (MQ=255)                                                                                                                                               gcgccggcccggcgggcctgggctgcgccgacgtgctggtgcgcgccggggtaaccccggtggtgttcgacaaaaaccctgagatcggtggcctgctgaccttcggtatccccgagttcaagctggaaaagaccgtgctcagcaaccgcc    <  1:765859‑M1/150‑147 (MQ=255)                                                                                                                                                 gccggcccggtgggcctgggctgcgccgacgtgctggtgcgcgccggggtaaccccggtggtgttcgacaaaaaccctgagatcggtggcctgctgaccttcggtatccccgagttcaagctggaaaagaccgtgctcagcaaccgccgt  <  2:4604‑M1/150‑149 (MQ=255)                                                                                                                                                 gccggcccggcgggcctgggctgcgccgacgtgctggtgcgcgccggggtaaccccggtggtgttcgacaaaaaccctgagatcggtggcctgcttaccttcggtatccccga                                       <  1:964861‑M1/113‑112 (MQ=255)                                                                                                                                                 gccggcccggcgggcctgggctgcgccgacgtgctggtgcgcgccggggtaaccccggtggtgttcgacaaaaaccctgagatcggtggcctgcttaccttcggtatccccga                                       >  2:964861‑M1/1‑2 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTTCTCCACCGAGCCGATGGTCACCGCGCCGAAACCGTC  >  NC_002947/5792751‑5793044

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.