New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5792896	37 (0.820)	5 (0.120)	4/234	NT	11.0%	coding (491/1419 nt)	gltD	glutamate synthase subunit beta
	?	NC_002947	= 5792916	46 (1.080)					coding (471/1419 nt)	gltD	glutamate synthase subunit beta

ACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTTCTCCACCGAGCCGATGGTCACCGCGCCGAAACCGTCGTTCAGGGTGCAGGCA  >  NC_002947/5792769‑5793060                                                                                                                                                    |                                                                                                                                                 aCGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCACCGGGCCGgc                                                                                                                                                <  2:4604‑M2/150‑3 (MQ=255)   ggcggTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGgcgc                                                                                                                                              <  1:765859‑M2/150‑5 (MQ=255)            tGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATgg                                                                                                                                     >  2:572260/1‑150 (MQ=255)            tGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCACCGGGCCGGCGCCGATGATgg                                                                                                                                     <  1:4604/150‑1 (MQ=255)            tGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCACCAACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATgg                                                                                                                                     >  1:73858/1‑150 (MQ=255)                             aGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTAACGAAGAACTCGGGGCTTGCCCAGGTACTGACCAGCACGTCGGCGCAGCCCCGGCCCGCCGGGCCCGCGCCGATGATGGCAACGCGCTTGCCGGtt                                                                                                                    <  1:990919/150‑1 (MQ=255)                                ttGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGc                                                                                                                 <  2:1094297/150‑1 (MQ=255)                                 tGAACTCGGGGATACCGAAGGTCAGCAGGCCACCTACTGCAGGGTTCTTGTCGAATACCACCGTTTTTACCCCGGCGCGCACCAGCACGGCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCt                                                                                                                <  2:73858/150‑1 (MQ=255)                                 tGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCt                                                                                                                <  2:796461/150‑1 (MQ=255)                                   aaCTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTg                                                                                                              >  2:215415/1‑150 (MQ=255)                                    aCTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGa                                                                                                             <  2:1044312/150‑1 (MQ=255)                                    aCTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGATTGa                                                                                                             >  1:249834/1‑150 (MQ=255)                                      tCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGAcc                                                                                                           >  1:831037/1‑150 (MQ=255)                                      tCGGGGATACCGAAGGTAAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGgc                                                                                                                                                <  1:964861‑M2/113‑3 (MQ=255)                                      tCGGGGATACCGAAGGTAAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGgc                                                                                                                                                >  2:964861‑M2/1‑111 (MQ=255)                                            aTACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGAc                                                                                                     <  1:710065/150‑1 (MQ=255)                                                cGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTgg                                                                                                                  <  2:1026772/133‑1 (MQ=255)                                                cGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTgg                                                                                                                  >  1:1026772/1‑133 (MQ=255)                                                cGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGt                                                                                                 >  2:1093805/1‑150 (MQ=255)                                                   aGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCg                                                                                              <  1:113775/150‑1 (MQ=255)                                                     gTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGa                                                                                            >  1:837111/1‑150 (MQ=255)                                                                     tctcAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACGAGCGCGTCGGAGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGTCGGTTGGCTTGACCTTGGACATGTCCGGGCGCCAGCCCATGGCGa                                                                            >  2:44831/1‑150 (MQ=255)                                                                                ttGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCg                                                                 <  2:837111/150‑1 (MQ=255)                                                                                ttGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCg                                                                 <  1:83114/150‑1 (MQ=255)                                                                                          ccaccGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGAc                                                                                                            >  2:517244/1‑97 (MQ=255)                                                                                          ccaccGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGAc                                                                                                            <  1:517244/97‑1 (MQ=255)                                                                                           caccGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACtt                                                      >  2:605916/1‑150 (MQ=255)                                                                                           caccGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACtt                                                      >  2:566105/1‑150 (MQ=255)                                                                                            accGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTa                                                         <  1:208577/146‑1 (MQ=255)                                                                                            accGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTa                                                         >  2:208577/1‑146 (MQ=255)                                                                                            accGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTtc                                                     >  2:654766/1‑150 (MQ=255)                                                                                             ccGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATg                                                                                <  1:1025766/122‑1 (MQ=255)                                                                                             ccGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATg                                                                                >  2:1025766/1‑122 (MQ=255)                                                                                             ccGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTAc                                                        >  2:690295/1‑146 (MQ=255)                                                                                             ccGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTAc                                                        <  1:690295/146‑1 (MQ=255)                                                                                                   ttACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTTCTCCACCg                                              >  2:1133468/1‑150 (MQ=255)                                                                                                       cccGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTTCTCCACCGAGcc                                          >  1:815049/1‑150 (MQ=255)                                                                                                                      cACGTCGGCGCAGCCCAGGCCCGCCGGGCCGgcgccgacgtgctggtgcgcgccggggtaaccccggtggtgttcgacaaaaaccctga                                                                                        >  1:195619‑M2/1‑31 (MQ=255)                                                                                                                      cACGTCGGCGCAGCCCAGGCCCGCCGGGCCGgcgccgacgtgctggtgcgcgccggggtaaccccggtggtgttcgacaaaaaccctga                                                                                        <  2:195619‑M2/89‑59 (MQ=255)                                                                                                                         gTCGGCGCAGCCCAGGCCCGCCGGGCCGgcgccgacgtgctggtgcgcgccggggtaaccccggtggtgttcgacaaaaaccctgagatcggtggcctgctgaccttcggtatccccgagttcaagctggaaaagaccgtgctcagcaac                        <  2:529554‑M2/150‑123 (MQ=255)                                                                                                                         gTCGGCGCAGCCCAGGCCCGCCGGGCCGgcgccgacgtgctggtgcgcgccggggtaaccccggtggtgttcgacaaaaaccctgagatcggtggcctgctgaccttcggtatccccgagttcaagc                                               <  1:591979‑M2/127‑100 (MQ=255)                                                                                                                         gTCGGCGCAGCCCAGGCCCGCCGGGCCGgcgccgacgtgctggtgcgcgccggggtaaccccggtggtgttcgacaaaaaccctgagatcggtggcctgctgaccttcggtatccccgagttcaagc                                               >  2:591979‑M2/1‑28 (MQ=255)                                                                                                                          tCGGCGCCGGCCCGGCGGGCCTGCGCGGCTCCGACGATGACAGCGCGCTTGCGGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCACGGCGAAGGCGGTGTCAGTCATGTACTTCTCCACCGAGCCGATGGTCACCGCGCCGaaa                       <  2:396595/150‑1 (MQ=255)                                                                                                                           cGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTTCTCCACCGAGCCGATGGTCACCGCGCCGAAAc                      <  1:572260/150‑1 (MQ=255)                                                                                                                                 aGCCCAGGCCCGCCGGGCCGGCGCCTATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTTCTCCACCGAGCCGATGGTCACCGCGCCGAAACcgtcgt                >  2:380413/1‑150 (MQ=255)                                                                                                                                    ccAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTTCTCCACCGAGCCGATGGTCACCGCGCCGAAACCGTCGTTCa             <  1:380413/150‑1 (MQ=255)                                                                                                                                     cAGGCCCGCCGGGCCGGCGCCGATGATGGCAACTCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTAc                                                        <  2:887181/106‑1 (MQ=255)                                                                                                                                     cAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTAc                                                        >  1:887181/1‑106 (MQ=255)                                                                                                                                     cAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTTCTCCACCGAGCCGATGGTCACCGCGCCGAAACCGTCGTTCAg            <  1:1093805/150‑1 (MQ=255)                                                                                                                                      aGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTTCTCCACCGAGCCGATGGTCACCGCGCCGAAACCGTCGTTCAgg           >  1:42804/1‑150 (MQ=255)                                                                                                                                      aGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTTCTCCACCGAGCCGATGGTCACCGCGCCGAAACCGTCGTTCAgg           >  1:1130232/1‑150 (MQ=255)                                                                                                                                       tcggcgccgGCCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTc                                                                  <  2:826037/90‑1 (MQ=255)                                                                                                                                       tcggcgccgGCCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTc                                                                  >  1:826037/5‑94 (MQ=255)                                                                                                                                            gccgggccggCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTTCTCCACCGAGCCGATGGTCACCGCGCCGAAACCGTCGTTCAGGGTGCAg     <  2:762384/150‑1 (MQ=255)                                                                                                                                               gggccggCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTTCTCCACCGAGCCGATGGTCACCGCGCCGAAACCGTCGTTCAGGGTGCAGGCa  <  2:42804/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 ACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCGCACCAGCACGTCGGCGCAGCCCAGGCCCGCCGGGCCGGCGCCGATGATGGCAACGCGCTTGCCGGTTGGCTTGACCTTGGACATGTCCGGACGCCAGCCCATGGCGAAGGCGGTGTCGGTGATGTACTTCTCCACCGAGCCGATGGTCACCGCGCCGAAACCGTCGTTCAGGGTGCAGGCA  >  NC_002947/5792769‑5793060

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.