New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5796762 =	48 (1.060)	4 (0.090)	4/236	NT	7.7%	coding (1194/4446 nt)	gltB	L‑glutamate synthase subunit alpha
	?	NC_002947	5796792 =	50 (1.160)					coding (1164/4446 nt)	gltB	L‑glutamate synthase subunit alpha

CTGGCCACACCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGCAGGCACACCGC  >  NC_002947/5796613‑5796908                                                                                                                                                      |                                                                                                                                                   cTGGCCACACCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATc                                                                                                                                                    <  1:972772/150‑1 (MQ=255) cTGGCCACACCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATc                                                                                                                                                    >  1:157489/1‑150 (MQ=255)   gccggtatcgtcatgaccgaaggccgccacgcggtgtgcctgctcgaccgtaacggtctacgcccggcgcgctgggtgaccaccaccaatggttacatcaccatcgcctcggaaatcggcgtatggggctatcagcctgaggaagtgCTg                                                                                                                                                  >  1:642991‑M1/148‑150 (MQ=255)   gccggtatcgtcatgaccgaaggccgccacgcggtgtgcctgctcgaccgtaacggtctacgcccggcgcgctgggtgaccaccaccaatggttacatcaccatcgcctcggaaatcggcgtatggggctatcagcctgaggaagtgCTg                                                                                                                                                  >  1:373305‑M1/148‑150 (MQ=255)   gccggtatcgtcatgaccgaaggccgccacgcggtgtgcctgctcgaccgtaacggtctacgcccggcgcgctgggtgaccaccaccaatggttacatcaccatcgcctcggaaatcggcgtatggggctatcagcctgaggaagtgCTg                                                                                                                                                  >  1:351007‑M1/148‑150 (MQ=255)      ggtatcgtcatgaccgaaggccgccacgcggtgtgcctgctcgaccgtaacggtctacgcccggcgcgctgggtgaccaccaccaatggttacatcaccatcgcctcggaaatcggcgtatggggctatcagcctgaggaagtgCTGGcc                                                                                                                                               <  1:793663‑M1/6‑1 (MQ=255)        cacCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCg                                                                                                                                             <  1:522489/150‑1 (MQ=255)                        cAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCGCGGCAAGGATCTGGCCCGGGCCGACACGGCCCtt                                                                                                                             <  2:610549/150‑1 (MQ=255)                          gCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTgg                                                                                                                           >  1:1129386/1‑150 (MQ=255)                                  tGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTg                                                                                                                            >  1:1120987/1‑141 (MQ=255)                                  tGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTg                                                                                                                            <  2:1120987/141‑1 (MQ=255)                                    gATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTc                                                                                                                 <  2:765266/150‑1 (MQ=255)                                     aTGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTcc                                                                                                                >  2:128260/1‑150 (MQ=255)                                            tGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCt                                                                                                         <  2:601958/150‑1 (MQ=255)                                            tGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCGCAGGCt                                                                                                         >  1:106276/1‑150 (MQ=255)                                                 tGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAg                                                                                                    >  2:1067197/1‑150 (MQ=255)                                                             cagcGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCg                                                                                        >  2:83291/1‑150 (MQ=255)                                                               gcgcTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGAt                                                                                      >  2:1089030/1‑150 (MQ=255)                                                                  cTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTc                                                                                   <  1:128260/150‑1 (MQ=255)                                                                       aCGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAgg                                                                              <  2:927655/150‑1 (MQ=255)                                                                               cgcgACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTg                                                                      <  2:570450/150‑1 (MQ=255)                                                                                gcgACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGa                                                                     >  2:574883/1‑150 (MQ=255)                                                                                gcgACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGa                                                                     >  1:650328/1‑150 (MQ=255)                                                                                 cgACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGAt                                                                    >  2:1191224/1‑150 (MQ=255)                                                                                     ttCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTaa                                                                >  1:315895/1‑150 (MQ=255)                                                                                     ttCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTaa                                                                >  1:691986/1‑150 (MQ=255)                                                                                       accaatggttacatcaccatcgcctcggaaatcggcgtatggggctatcagcctgaggaagtgCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTc                                                                                                                 <  1:124117‑M1/36‑1 (MQ=255)                                                                                       accaatggttacatcaccatcgcctcggaaatcggcgtatggggctatcagcctgaggaagtgCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTc                                                                                                                 >  2:124117‑M1/64‑99 (MQ=255)                                                                                                 tCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATtggtggtg                                                    <  2:691986/150‑1 (MQ=255)                                                                                                       ccatcgcctcggaaatcggcgtatggggctatcagcctgaggaagtgCTGGCCCGGGCCGACACGGCCCTTGGc                                                                                                                          >  1:1140724‑M1/48‑74 (MQ=255)                                                                                                       ccatcgcctcggaaatcggcgtatggggctatcagcctgaggaagtgCTGGCCCGGGCCGACACGGCCCTTGGc                                                                                                                          <  2:1140724‑M1/27‑1 (MQ=255)                                                                                                         gTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCa                                                <  2:1126137/146‑1 (MQ=255)                                                                                                         gTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCa                                                >  1:1126137/1‑146 (MQ=255)                                                                                                          tCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGAt                                                                                                      <  1:676867/91‑1 (MQ=255)                                                                                                          tCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGAt                                                                                                      >  2:676867/1‑91 (MQ=255)                                                                                                          tCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAg                                           >  2:712828/1‑150 (MQ=255)                                                                                                                tCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGc                                                                                                          >  1:366751/1‑81 (MQ=255)                                                                                                                tCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGc                                                                                                          <  2:366751/81‑1 (MQ=255)                                                                                                                 cGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGcca                                    <  2:650328/150‑2 (MQ=255)                                                                                                                   aGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCAccc                                             >  2:941667/1‑139 (MQ=255)                                                                                                                   aGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCAccc                                             <  1:941667/139‑1 (MQ=255)                                                                                                                    ggATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCGGACACGGCCCTTGGCCAGCACTTCCTCAGGGTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGc                                 <  2:157489/150‑1 (MQ=255)                                                                                                                       tCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTa                              <  2:1129386/150‑1 (MQ=255)                                                                                                                          ggCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGAc                           >  1:748330/1‑150 (MQ=255)                                                                                                                           gCCGGTTTCGGTGTCCCGGGCAAGGATCTCGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCCATTTCCTGGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGAcc                          <  2:106276/150‑1 (MQ=255)                                                                                                                           gCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATAc                                                                                            >  2:1161684/1‑84 (MQ=255)                                                                                                                           gCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATAc                                                                                            <  1:1161684/84‑1 (MQ=255)                                                                                                                             cGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATtggtg                                                       <  1:696451/119‑1 (MQ=255)                                                                                                                             cGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATtggtg                                                       >  2:696451/1‑119 (MQ=255)                                                                                                                               gTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTa                      <  1:83291/150‑1 (MQ=255)                                                                                                                                tttCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTAc                     <  1:1191224/150‑1 (MQ=255)                                                                                                                                  tCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACgg                   <  2:748330/150‑1 (MQ=255)                                                                                                                                          cACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCa                                                                                                             <  1:1158230/52‑1 (MQ=255)                                                                                                                                          cACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCa                                                                                                             >  2:1158230/1‑52 (MQ=255)                                                                                                                                           aCGGCAAGGATCTGGCCCGGGCCGACCCGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGCAgg          <  1:487790/150‑1 (MQ=255)                                                                                                                                              gCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCgg                                   >  1:451187/1‑122 (MQ=255)                                                                                                                                              gCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCgg                                   <  2:451187/122‑1 (MQ=255)                                                                                                                                                aaGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGCAGGCacac     >  2:793663/1‑150 (MQ=255)                                                                                                                                                   gATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATtggtg                                                       >  1:377994/1‑97 (MQ=255)                                                                                                                                                   gATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATtggtg                                                       <  2:377994/97‑1 (MQ=255)                                                                                                                                                   gATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGCAGGCACACcgc  >  1:819395/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CTGGCCACACCCTGGTCGTCGGTCAGCGTCGCCTGGATGCGGGTGGCGTGCTGACGCAGCCAGCGCTTGTACGGGTGGCGCGACTTCAGGCGGTTGTCGATGGCGTCGGTGTCGAGGATCTGGCCGGTTTCGGTGTCCACGGCAAGGATCTGGCCCGGGCCGACACGGCCCTTGGCCAGCACTTCCTCAGGCTGATAGCCCCATACGCCGATTTCCGAGGCGATGGTGATGTAACCATTGGTGGTGGTCACCCAGCGCGCCGGGCGTAGACCGTTACGGTCGAGCAGGCACACCGC  >  NC_002947/5796613‑5796908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.