New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5891373 =	50 (1.110)	3 (0.070)	3/232	NT	6.6%	coding (301/786 nt)	plpB	NLPA lipoprotein
	?	NC_002947	5891399 =	38 (0.900)					coding (275/786 nt)	plpB	NLPA lipoprotein

TTCAAGGTAATCAGGCCGGCCTTCTGCAGCAGCAGCAGCGCACGGCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCGGTGAAGACCTTGATCTGAAGGT  >  NC_002947/5891225‑5891519                                                                                                                                                     |                                                                                                                                                    agccgaccctggcaaaagaaggcgtggaccttcagatcaaggtcttcaccgattacgtgcagccgaacgtgcaggtggaccagaagcgtctggacgccaactacttccagacgctgccgtacctgcagaacttcaacgaaggcaagggca                                                                                                                                                    <  1:1138916‑M1/2‑1 (MQ=255)  tCAAGGTAATCAGGCCGGCCTTCTGCAGCAGCAGCAGCGCACGGCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTAGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTacac                                                                                                                                                   <  2:233720/150‑1 (MQ=255)           tCAGGCCGGCCTTCTGCAGCAGCAGCAGCGCACGGCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCACGTACCCACCGAAGGGCTCTACGTGTACACCCACCACgg                                                                                                                                          <  1:401428/150‑1 (MQ=255)             aGGCCGGCCTTCTGCAGCAGCAGCAGCGCACGGCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGtt                                                                                                                                        <  2:1070208/150‑1 (MQ=255)               gccggccTTCTGCAGCAGCAGCAGCGCACGGCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTc                                                                                                                                      >  2:655489/1‑150 (MQ=255)                  ggccTTCTGCAGCAGCAGCAGCGCACGGCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑g                                                                                                                                  <  1:655489/150‑1 (MQ=255)                      ttCTGCATCAGCAGCAGCGCACGGCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑ggtgg                                                                                                                              <  2:107757/150‑1 (MQ=255)                                gcagcagcGCACGGCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGc                                                                                                                    >  1:632949/1‑150 (MQ=255)                                   gcagcGCACGGCCGCTGTTACTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGttt                                                                                                                                       <  1:1066919/129‑1 (MQ=255)                                   gcagcGCACGGCCGCTGTTACTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGttt                                                                                                                                       >  2:1066919/1‑129 (MQ=255)                                        gcACGGCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTg                                                                                                            >  2:75084/1‑150 (MQ=255)                                        gcACGGCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGATTTCCA‑GGTGGGTGCCCTTGCCTTCGTTg                                                                                                            >  1:508870/1‑150 (MQ=255)                                           cGGCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAg                                                                                                         <  1:652460/150‑1 (MQ=255)                                            ggCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGt                                                                                                        >  1:1035431/1‑150 (MQ=255)                                               cGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCt                                                                                                     >  2:305882/1‑150 (MQ=255)                                                   gTTGCTGCCCTCGTTAGGGATGGTAACGGTTGCGCCTTTTTTCAGCTCGCTCAGTGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAg                                                                                                 <  2:21117/150‑1 (MQ=255)                                                        tgcCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACg                                                                                            <  1:663984/150‑1 (MQ=255)                                                           ccTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCa                                                                                         <  2:1035431/150‑1 (MQ=255)                                                           ccTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCa                                                                                         >  1:792385/1‑150 (MQ=255)                                                             tCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGc                                                                                       >  2:173076/1‑150 (MQ=255)                                                             tCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGc                                                                                       <  2:792385/150‑1 (MQ=255)                                                                ttAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTc                                                                                    >  2:930353/1‑150 (MQ=255)                                                                     gATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGaa                                                                               <  1:930353/150‑1 (MQ=255)                                                                           aaCGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAagtagt                                                                          <  2:402852/149‑1 (MQ=255)                                                                           aaCGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAagtagt                                                                          >  1:402852/1‑149 (MQ=255)                                                                           aaCGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGtt                                                                         >  1:880056/1‑150 (MQ=255)                                                                           aaCGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCCAGCCGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGtt                                                                         <  1:75084/150‑1 (MQ=255)                                                                            aCGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTg                                                                        <  1:173076/150‑1 (MQ=255)                                                                              ggTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGc                                                                      <  2:996669/150‑1 (MQ=255)                                                                               gTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACgg                                                                                           >  1:531251/1‑128 (MQ=255)                                                                               gTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACgg                                                                                           <  2:531251/128‑1 (MQ=255)                                                                                ttGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACccacca                                                                                                                                             >  1:118488/1‑78 (MQ=255)                                                                                ttGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACccacca                                                                                                                                             <  2:118488/78‑1 (MQ=255)                                                                                 tGCGCCTTCTTCCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTc                                                                   <  2:821671/150‑1 (MQ=255)                                                                                  gcgcCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTcc                                                                  >  2:751134/1‑150 (MQ=255)                                                                                      gcgtctggacgccaactacttccagacgctgccgtacctgcagaacttcaacgaaggcaagggCACCCACCACGGTTTCCA‑GGTGGGTGcc                                                                                                                         <  1:424750‑M1/28‑1 (MQ=255)                                                                                      gcgtctggacgccaactacttccagacgctgccgtacctgcagaacttcaacgaaggcaagggCACCCACCACGGTTTCCA‑GGTGGGTGcc                                                                                                                         >  2:424750‑M1/64‑91 (MQ=255)                                                                                      cttcttTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑g                                                                                                                                  <  1:676129/82‑1 (MQ=255)                                                                                      cttcttTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑g                                                                                                                                  >  2:676129/1‑82 (MQ=255)                                                                                              aGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGt                                                                                                                                         <  2:570253/68‑1 (MQ=255)                                                                                              aGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGt                                                                                                                                         >  1:570253/1‑68 (MQ=255)                                                                                              aGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGATTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTgg                                                      <  2:508870/150‑1 (MQ=255)                                                                                              aGCTCGCTCAGGGCCTTGACATTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTgg                                                      >  1:9134/1‑150 (MQ=255)                                                                                                 tcgctcAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTcc                                                   >  2:1138916/1‑150 (MQ=255)                                                                                                       aGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTATGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGc                                             <  2:673591/150‑1 (MQ=255)                                                                                                       aGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTg                                                                                  <  2:768588/113‑1 (MQ=255)                                                                                                       aGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTg                                                                                  >  1:768588/1‑113 (MQ=255)                                                                                                         ggCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACCCCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGtt                                                                                                             <  1:388304/84‑1 (MQ=255)                                                                                                         ggCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGtt                                                                                                             >  2:388304/1‑84 (MQ=255)                                                                                                                      ttcGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACg                              >  1:765407/1‑150 (MQ=255)                                                                                                                        cGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTa                            >  1:653593/1‑150 (MQ=255)                                                                                                                            tAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCg                        <  2:632949/150‑1 (MQ=255)                                                                                                                               ccACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCGGTg                     <  2:653593/150‑1 (MQ=255)                                                                                                                                        acgaaggcaagggCACCCACCT‑GGAAACCGTGGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCGGTGAAGACCTTg            <  1:45328‑M1/137‑1 (MQ=255)                                                                                                                                           tctACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCGGTGAAGACCTTGATc         <  2:714526/150‑1 (MQ=255)                                                                                                                                                  gtACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCGGTGAAGACCTTGATCTGAAGGt  >  1:1086125/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TTCAAGGTAATCAGGCCGGCCTTCTGCAGCAGCAGCAGCGCACGGCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCGGTGAAGACCTTGATCTGAAGGT  >  NC_002947/5891225‑5891519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.