New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5891373 =	50 (1.110)	3 (0.070)	3/232	NT	6.6%	coding (301/786 nt)	plpB	NLPA lipoprotein
	?	NC_002947	5891399 =	38 (0.900)					coding (275/786 nt)	plpB	NLPA lipoprotein

GCAGCAGCGCACGGCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCGGTGAAGACCTTGATCTGAAGGTCCACGCCTTCTTTTGCCAGGGTCGGCT  >  NC_002947/5891256‑5891546                                                                                                                                                 |                                                                                                                                                    gcagcagcGCACGGCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGc                                                                                                                                               >  1:632949/1‑150 (MQ=255)        caaggtcttcaccgattacgtgcagccgaacgtgcaggtggaccagaagcgtctggacgccaactacttccagacgctgccgtacctgcagaacttcaacgaaggcaagggcacccaccacggtttccaggtgggtgCCCTTGCCTTCGt                                                                                                                                         <  1:45328‑M2/13‑1 (MQ=255)         gcACGGCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTg                                                                                                                                       >  2:75084/1‑150 (MQ=255)         gcACGGCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGATTTCCA‑GGTGGGTGCCCTTGCCTTCGTTg                                                                                                                                       >  1:508870/1‑150 (MQ=255)            cGGCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAg                                                                                                                                    <  1:652460/150‑1 (MQ=255)             ggCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGt                                                                                                                                   >  1:1035431/1‑150 (MQ=255)                cGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCt                                                                                                                                >  2:305882/1‑150 (MQ=255)                    gTTGCTGCCCTCGTTAGGGATGGTAACGGTTGCGCCTTTTTTCAGCTCGCTCAGTGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAg                                                                                                                            <  2:21117/150‑1 (MQ=255)                         tgcCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACg                                                                                                                       <  1:663984/150‑1 (MQ=255)                            ccTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCa                                                                                                                    >  1:792385/1‑150 (MQ=255)                            ccTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCa                                                                                                                    <  2:1035431/150‑1 (MQ=255)                              tCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGc                                                                                                                  >  2:173076/1‑150 (MQ=255)                              tCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGc                                                                                                                  <  2:792385/150‑1 (MQ=255)                                 ttAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTc                                                                                                               >  2:930353/1‑150 (MQ=255)                                      gATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGaa                                                                                                          <  1:930353/150‑1 (MQ=255)                                            aaCGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAagtagt                                                                                                     >  1:402852/1‑149 (MQ=255)                                            aaCGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAagtagt                                                                                                     <  2:402852/149‑1 (MQ=255)                                            aaCGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGtt                                                                                                    >  1:880056/1‑150 (MQ=255)                                            aaCGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCCAGCCGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGtt                                                                                                    <  1:75084/150‑1 (MQ=255)                                             aCGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTg                                                                                                   <  1:173076/150‑1 (MQ=255)                                               ggTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGc                                                                                                 <  2:996669/150‑1 (MQ=255)                                                gTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACgg                                                                                                                      >  1:531251/1‑128 (MQ=255)                                                gTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACgg                                                                                                                      <  2:531251/128‑1 (MQ=255)                                                  tGCGCCTTCTTCCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTc                                                                                              <  2:821671/150‑1 (MQ=255)                                                   gcgcCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTcc                                                                                             >  2:751134/1‑150 (MQ=255)                                                       gcgtctggacgccaactacttccagacgctgccgtacctgcagaacttcaacgaaggcaagggCACCCACCACGGTTTCCA‑GGTGGGTGcc                                                                                                                                                    >  2:424750‑M1/64‑91 (MQ=255)                                                       gcgtctggacgccaactacttccagacgctgccgtacctgcagaacttcaacgaaggcaagggCACCCACCACGGTTTCCA‑GGTGGGTGcc                                                                                                                                                    <  1:424750‑M1/28‑1 (MQ=255)                                                               aGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGATTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTgg                                                                                 <  2:508870/150‑1 (MQ=255)                                                               aGCTCGCTCAGGGCCTTGACATTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTgg                                                                                 >  1:9134/1‑150 (MQ=255)                                                                  tcgctcAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTcc                                                                              >  2:1138916/1‑150 (MQ=255)                                                                        aGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTATGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGc                                                                        <  2:673591/150‑1 (MQ=255)                                                                        aGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTg                                                                                                             >  1:768588/1‑113 (MQ=255)                                                                        aGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTg                                                                                                             <  2:768588/113‑1 (MQ=255)                                                                          ggCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACCCCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGtt                                                                                                                                        <  1:388304/84‑1 (MQ=255)                                                                          ggCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGtt                                                                                                                                        >  2:388304/1‑84 (MQ=255)                                                                                       ttcGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACg                                                         >  1:765407/1‑150 (MQ=255)                                                                                         cGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTa                                                       >  1:653593/1‑150 (MQ=255)                                                                                             tAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCg                                                   <  2:632949/150‑1 (MQ=255)                                                                                                ccACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCGGTg                                                <  2:653593/150‑1 (MQ=255)                                                                                                         acgaaggcaagggCACCCACCT‑GGAAACCGTGGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCGGTGAAGACCTTg                                       <  1:45328‑M1/137‑1 (MQ=255)                                                                                                            tctACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCGGTGAAGACCTTGATc                                    <  2:714526/150‑1 (MQ=255)                                                                                                                   gtACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCGGTGAAGACCTTGATCTGAAGGt                             >  1:1086125/1‑150 (MQ=255)                                                                                                                     ggcacccacctggaaaccgtggtgggtgCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGc                                                                                       >  2:424750‑M2/29‑91 (MQ=255)                                                                                                                     ggcacccacctggaaaccgtggtgggtgCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGc                                                                                       <  1:424750‑M2/63‑1 (MQ=255)                                                                                                                       ACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCGGTGAAGACCTTGATCTGAAGGTCCAc                         >  2:880056‑M1/1‑150 (MQ=255)                                                                                                                         CCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGc                                                                                       <  2:553556‑M1/86‑1 (MQ=255)                                                                                                                         CCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGc                                                                                       >  1:553556‑M1/1‑86 (MQ=255)                                                                                                                         CCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCGGTGAAGACCTTGATCTGAAGGTCCACGc                       <  1:181880‑M1/150‑1 (MQ=255)                                                                                                                          CACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCTGTTAAGACCTTGATCTGAATGTCCacgac                      <  2:665705‑M1/150‑3 (MQ=255)                                                                                                                          CACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTAAGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCAGGTTTGGCTGCACGTAATCGGTGAAGACATTGATCTGAAGGTCAACgca                      <  1:454936‑M1/150‑2 (MQ=255)                                                                                                                                     ccA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCGGTGAAGACCTTGATCTGAAGGTCCACGCCTTCTTTTGCCa           <  2:1086125/150‑1 (MQ=255)                                                                                                                                       a‑GGTGGGTGCCCTTGCCTTCGTTGCAGAGCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCGGTGAAGACCTTGATCTGAAGGTCCACGCCTTCTTTTGCCAgg         <  1:305882/150‑1 (MQ=255)                                                                                                                                       a‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCGGTGAAGACCTTGTGCTGAATGTCTACTCCTTCGTTTGCCAgg         >  2:968202/1‑150 (MQ=39)                                                                                                                                               tgCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCGGTGAAGACCTTGATCTGAAGGTCCACGCCTTCTTTTGCCAGGGTCGGCt  <  1:1138916‑M2/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GCAGCAGCGCACGGCCGCTGTTGCTGCCCTCGTTAGGGATGGCAACGGTTGCGCCTTCTTTCAGCTCGCTCAGGGCCTTGACCTTCTTCGAGTAGCCACCGAAGGGCTCTACGTGTACACCCACCACGGTTTCCA‑GGTGGGTGCCCTTGCCTTCGTTGAAGTTCTGCAGGTACGGCAGCGTCTGGAAGTAGTTGGCGTCCAGACGCTTCTGGTCCACCTGCACGTTCGGCTGCACGTAATCGGTGAAGACCTTGATCTGAAGGTCCACGCCTTCTTTTGCCAGGGTCGGCT  >  NC_002947/5891256‑5891546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.