New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 324741	30 (0.660)	6 (0.140)	6/234	NT	16.1%	coding (25/1320 nt)	oprQ	outer‑membrane porin D
	?	NC_002947	= 324766	34 (0.800)					coding (50/1320 nt)	oprQ	outer‑membrane porin D

CACCCGGCTGGATCCGCATAGCGTCGAACCTACGAAGGGGCGTTGGTTCCTGGCGTCATATTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCACGCCAACGTCCTTCTGCGCAACGCCTACATCAACCGTGACAAGAAGCATGGCACCGACGACCAGATCGAATGGGGCCAGGCGTTCATCGCCA  >  NC_002947/324619‑324912                                                                                                                                                    |                                                                                                                                                   cACCCGGCTGGATCCGCATAGCGTCGAACCTACGAAGGGGCGTTGGTTCCTGGCGTCATATTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAACCCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACcc                                                                                                                                                  >  1:1136129‑M2/1‑148 (MQ=255)                    aGCGTCGAACCTACGAAGGGGCGTTGGTTCCTGGCGTCATATTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCa                                                                                                                               <  1:498115/150‑1 (MQ=255)                        tCGAACCTACGAAGGGGCGTTGGTTCCTGGCGTCATATTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCt                                                                                                                           >  2:1193970/1‑150 (MQ=255)                          gAACCTACGAAGGGGCGTTGGTTCCTGGCGTCATATTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGa                                                                                                                         <  1:1193970/150‑1 (MQ=255)                          gAACCTACGAAGGGGCGTTGGTTCCTGGCGTCATATTGCAGCGCGTTTTTGATTAAAAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGa                                                                                                                         <  2:478999/150‑1 (MQ=255)                            aCCTACGAAGGGGCGTTGGTTCCTGGCGTCATATTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACa                                                                                                                       <  2:371543/150‑1 (MQ=255)                              cTACGAAGGGGCGTTGGTTCCTGGCGTCATATTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAgg                                                                                                                             <  2:447542/142‑1 (MQ=255)                              cTACGAAGGGGCGTTGGTTCCTGGCGTCATATTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAgg                                                                                                                             >  1:447542/1‑142 (MQ=255)                                 cGAAGGGGCGTTGGTTCCTGGCGTCATATTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAg                                                                                                                  <  2:443646/150‑1 (MQ=255)                                   aaGGGGCGTTGGTTCCTGGCGTCATATTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACCCGATGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAggg                                                                                                                <  1:75590/150‑1 (MQ=255)                                       ggCGTTGGTTCCTGGCGTCATATTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTc                                                                                                            <  1:825747/150‑1 (MQ=255)                                            tGGTTCCTGGCGTCATATTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGa                                                                                                       <  1:512225/150‑1 (MQ=255)                                             ggTTCCTGGCGTCATATTGCAGCGCGTTTTTGCTTAAGAAACAGAAGAAACAACATGTTGAAAACCAGGATCAGCTTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAg                                                                                                      <  1:569852/150‑1 (MQ=255)                                              gTTCCTGGCGTCATATTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAgg                                                                                                     >  2:1134316/1‑150 (MQ=255)                                                  cTGGCGTCATATTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAg                                                                                                                                          >  1:1142346/1‑109 (MQ=255)                                                  cTGGCGTCATATTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAg                                                                                                                                          <  2:1142346/109‑1 (MQ=255)                                                       gTCATATTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCACg                                                                                            <  2:703355/150‑1 (MQ=255)                                                           tatTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCAc                                                                                             >  1:226880/1‑145 (MQ=255)                                                           tatTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCAc                                                                                             <  2:226880/145‑1 (MQ=255)                                                                    gcgTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCg                                                                                                        >  1:253063/1‑125 (MQ=255)                                                                    gcgTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCg                                                                                                        <  2:253063/125‑1 (MQ=255)                                                                    gcgTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCAGCGAGGACAGTCACGTCAACGTCCTTCt                                                                               <  2:273289/150‑1 (MQ=255)                                                                            taTTAACAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGTGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCACGCCAACGTCCTTCTGCGCAACg                                                                       <  2:855505/149‑1 (MQ=255)                                                                              ttAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCACGCCAACGTCCTTCTGCGCAACGcc                                                                     >  1:712127/1‑150 (MQ=255)                                                                                        aGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCaa                                                                                                                   >  1:131103/1‑94 (MQ=255)                                                                                        aGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCaa                                                                                                                   <  2:131103/94‑1 (MQ=255)                                                                                         ggAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCACGCCAACGTCCTTCTGCGCACCGCCTACATCAACCg                                                          >  2:43470/1‑150 (MQ=255)                                                                                                aacaTGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCACGCCAACGTCCTTCTGCGCAACGCCTACATCAACCGTGACaag                                                   >  2:914006/1‑150 (MQ=255)                                                                                                            aCCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACccaggctgatcctggttttcaacatgttgttttccttatttcttaatcaaaaacgcgctgcaatatgacgccaggaaccaa                                                                   >  1:599337‑M2/1‑41 (MQ=255)                                                                                                            aCCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACccaggctgatcctggttttcaacatgttgttttccttatttcttaatcaaaaacgcgctgcaatatgacgccaggaaccaa                                                                   <  2:599337‑M2/122‑82 (MQ=255)                                                                                                              cAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCACGCCAACGTCCTTCTGCGCAACGCCTACATCAACCGTGACAAGAAGCATGGCACcga                                     >  2:614356/1‑150 (MQ=255)                                                                                                                      gCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCACGCCAACGTCCTTCTGCGCAACGCCTACATCAACCGTGACAGGAAGCATGGCACCGACGACCAGa                             >  1:473177/1‑150 (MQ=255)                                                                                                                       ccTGGTCGCCCTGGCGATGATCGCCGCGACccaggctgatcctggttttcaacatgttgttttccttatttcttaatcaaaaacgcgctgcaatatgacgccaggaaccaacgccccttcgtaggttcgacgctatgcggatccagccgg                            >  2:601995‑M2/1‑30 (MQ=255)                                                                                                                       ccTGGTCGCCCTGGCGATGATCGCCGCGACccaggctgatcctggttttcaacatgttgttttccttatttcttaatcaaaaacgcgctgcaatatgacgccaggaaccaacgccccttcgtaggttcgacgctatgcggatccagccgg                            <  1:601995‑M2/150‑121 (MQ=255)                                                                                                                         tGGTCGCCCTGGCGATGATCGCCGCGACccaggctcatcctggttttcaacatgttgttttccttatttcttaatcaaaaacgcgctgcaatatgacgccaggaa                                                                       <  1:841808‑M2/105‑78 (MQ=255)                                                                                                                         tGGTCGCCCTGGCGATGATCGCCGCGACccaggctcatcctggttttcaacatgttgttttccttatttcttaatcaaaaacgcgctgcaatatgacgccaggaa                                                                       >  2:841808‑M2/1‑28 (MQ=255)                                                                                                                           gTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCACGCCAACGTCCTTCTGCGCAACGCCTACATCAACCGTGACAAGAAGCATGGCACCGACGACCAGATCGaa                        >  2:817806/1‑150 (MQ=255)                                                                                                                              gCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCACGCCAACGTCCTTCTGCGCAACGCCTACATCAACCGTGACAAGAAGCATGGCACCGACGACCAGATCGAATgg                     >  1:6457/1‑150 (MQ=255)                                                                                                                                ccTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCACGCCAACGTCCTTCTGCGCAACGCCTACATCAACCGTGa                                                       >  1:586592/1‑114 (MQ=255)                                                                                                                                ccTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCACGCCAACGTCCTTCTGCGCAACGCCTACATCAACCGTGa                                                       <  2:586592/114‑1 (MQ=255)                                                                                                                                ccTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCACGCCAACGTCCTTCTGCGCAACGCCTACATCAACCGTGACAAGAAGCATGGCACCGACGACCAGATCGAATgggg                   <  2:712127/150‑1 (MQ=255)                                                                                                                                      gatgatCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCACGCCAACGTCCTTCTGCGCAACGCCTACATCAACCGTGACAAGAAGCATGGCACCGACGACCAGATCGAATGGGGCCAGGc             >  1:53013/1‑150 (MQ=255)                                                                                                                                           tCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCACGCCAACGTCCTTCTGCGCAACGCCTACATCAACCGTGACAAGAAGCATGGCACCGACGACCAGATCGAATGGGGCCAGGCGTTCa        <  2:53013/150‑1 (MQ=255)                                                                                                                                                 cgACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCACGCCAACGTCCTTCTGCGCAACGCCTACATCAACCGTGACAGGAAGCATGGCACCGACGACCAGATCGAATGGGGCCAGGCGTTCATCGCCa  <  2:473177/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CACCCGGCTGGATCCGCATAGCGTCGAACCTACGAAGGGGCGTTGGTTCCTGGCGTCATATTGCAGCGCGTTTTTGATTAAGAAATAAGGAAAACAACATGTTGAAAACCAGGATCAGCCTGGTCGCCCTGGCGATGATCGCCGCGACCCAGGCTCAGGCCAATGACCAGGCTGACAGCAAGGGCTTCATCGAGGACAGTCACGCCAACGTCCTTCTGCGCAACGCCTACATCAACCGTGACAAGAAGCATGGCACCGACGACCAGATCGAATGGGGCCAGGCGTTCATCGCCA  >  NC_002947/324619‑324912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.