New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	345300 =	31 (0.690)	3 (0.070)	3/234	NT	9.1%	coding (306/1068 nt)	mutY	A/G‑specific adenine glycosylase
	?	NC_002947	345333 =	31 (0.730)					coding (273/1068 nt)	mutY	A/G‑specific adenine glycosylase

CGTCGAGGATCGGTGCGCGGATGCCCATGCTGATGCTGGCGATGGCGCCGGCAGTGGAGCGGCCAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTG  >  NC_002947/345191‑345482                                                                                                                                               |                                                                                                                                                      catgcaggccctgccaacggtgcaacccctggccgaggcaccggaggacgaagtgctgcacctgtggacgggccttggctactacacccgcgcacgcaacctgcaaaagGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCa                                                                                                                                                >  1:170393‑M1/110‑150 (MQ=255)                  cgGATGCCCATGCTGATGCTGGCGATGGCGCCGGCAGTGGAGCGGCCAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGTCCTTTTGCAGGTTGCGTGCGCGGgtg                                                                                                                               >  2:152462/1‑150 (MQ=255)                         ccATGCTGATGCTGGCGATGGCGCCGGCAGTGGAGCGGCCAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGc                                                                                                                        <  2:731189/150‑1 (MQ=255)                           atgctgatgctgGCGATGGCGCCGGCAGTGGAGCGGCCAATGCGGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCa                                                                                                                      >  1:535117/1‑150 (MQ=255)                           atgctgatgctgGCGATGGCGCCGGCAGTGGAGCGGCCAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCa                                                                                                                      >  1:383153/1‑150 (MQ=255)                            tgctgatgctgGCGATGGCGCCGGCAGTGGAGCGGCCAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCaa                                                                                                                     >  1:35807/1‑150 (MQ=255)                                 atgctgGCGATGGCGCCGGCAGTGGAGCGGCCAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGccc                                                                                                                <  2:692284/150‑1 (MQ=255)                                  tgctgGCGATGGCGCCGGCAGTGGAGCGGCCAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCg                                                                                                               >  1:446502/1‑150 (MQ=255)                                     tgGCGATGGCGCCGGCAGTGGAGCGGCCAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTcc                                                                                                            >  1:255977/1‑150 (MQ=255)                                       gCGATGGCGCCGGCAGTGGAGCGGCCAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCcac                                                                                                          <  1:100246/150‑1 (MQ=255)                                         gATGGCGCCGGCAGTGGAGCGGCCAATGCCGGGCAGCTCGGTAAGCTNCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTtgcgtgc                                                                                                                                      >  1:556604/1‑120 (MQ=255)                                         gATGGCGCCGGCAGTGGAGCGGCCAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTtgcgtgc                                                                                                                                      <  2:556604/120‑1 (MQ=255)                                           tGGCGCCGGCAGTGGAGCGGCCAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGt                                                                                                      >  1:614896/1‑150 (MQ=255)                                                     aGTGGAGCGGCCAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTc                                                                                            <  2:35807/150‑1 (MQ=255)                                                        ggAGCGGCCAATGCGGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGtc                                                                                         <  2:535117/150‑1 (MQ=255)                                                          aGCGGCCAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGGAGCACTTCGtcct                                                                                       >  1:88058/1‑150 (MQ=255)                                                           gCGGCCAATGCCAGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTCCGTCCGCAGATCTACTAGCAAAAGCCTGACCTCAGGTGCAGCACTTCGtcctc                                                                                      >  2:734917/1‑150 (MQ=255)                                                               ccAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGt                                                                                  <  1:152462/150‑1 (MQ=255)                                                                   tGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTgcag                                                                                                  <  2:383745/130‑1 (MQ=255)                                                                   tGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTgcag                                                                                                  >  1:383745/1‑130 (MQ=255)                                                                     ccGGGCAGCGCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCg                                                                            >  2:392793/1‑150 (MQ=255)                                                                                    aGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCATGGcctgggcg                                                             <  2:446502/150‑8 (MQ=255)                                                                                       tgctCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCAATCCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGtt                                                          <  1:698712/150‑1 (MQ=255)                                                                                                    gcgGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAg                                                                                                                                               >  2:529745/1‑52 (MQ=255)                                                                                                    gcgGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAg                                                                                                                                               <  1:529745/52‑1 (MQ=255)                                                                                                     cgGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAGGGCCTGCAt                                            <  2:255977/150‑1 (MQ=255)                                                                                                      tgcaaaaggccgccaaggtcgtcgtcgagcaacatggcggcCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGGTTGCACCGTTGGCAGGGCCTGCATg                                           >  1:170393‑M2/42‑150 (MQ=255)                                                                                                          aTTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGAGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAGGGCCTGCATGAAGc                                       <  2:523578/150‑1 (MQ=255)                                                                                                           ttCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAGGGCCTGCATGAAGCg                                      >  1:106348/1‑150 (MQ=255)                                                                                                              GCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCgg                                                                                                                                  >  2:1152554‑M1/1‑55 (MQ=255)                                                                                                              GCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCgg                                                                                                                                  <  1:1152554‑M1/55‑1 (MQ=255)                                                                                                                 GCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAGGGCCTGCATGAAGCGGTCGaa                                >  2:383153‑M1/1‑150 (MQ=255)                                                                                                                 GCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAGGGCCTGCATGAAGCGGTCGaa                                <  1:437099‑M1/150‑1 (MQ=255)                                                                                                                 GCCATGTTGATCCGCGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTCGTAGCCAACGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCGGGGCTTGCACCGTTGGCAGGGCCTGCATGAAGCGGTCGaa                                >  1:1151282‑M1/1‑150 (MQ=255)                                                                                                                  CCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAGGGCCTGCATGAAGCGGTCGAAg                               >  2:106348‑M1/1‑150 (MQ=255)                                                                                                                  CCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAGGGCCTGCATGAAGCGGTCGAAg                               >  1:531054‑M1/1‑150 (MQ=255)                                                                                                                   caaggtcgtcgtcgagcaacatggcggcCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAgg                                                                                                       <  2:1107276‑M2/49‑1 (MQ=255)                                                                                                                   caaggtcgtcgtcgagcaacatggcggcCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAgg                                                                                                       >  1:1107276‑M2/29‑77 (MQ=255)                                                                                                                       ttGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAGGGCCTGCATGAAGCGGTCGAAGTAAtt                          <  1:651287/150‑1 (MQ=255)                                                                                                                           tCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAGGGCCTGCATGAAGCGGTCGAAGTAATTGAGc                      >  2:1044625/1‑150 (MQ=255)                                                                                                                           tCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAGGGCCTGCATGAAGCGGTCGAAGTAATTGAGc                      >  1:785022/1‑150 (MQ=255)                                                                                                                              acgacgacCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACg                   <  2:785022/150‑1 (MQ=255)                                                                                                                                      cTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGAc           >  2:418422/1‑150 (MQ=255)                                                                                                                                       ttGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGAcc          >  1:1106328/1‑150 (MQ=255)                                                                                                                                          gcggcCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTgg       <  1:418422‑M2/145‑1 (MQ=255)                                                                                                                                            ggcCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGt     >  2:729709‑M2/4‑150 (MQ=255)                                                                                                                                               cTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTctg  <  1:729709/150‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                      CGTCGAGGATCGGTGCGCGGATGCCCATGCTGATGCTGGCGATGGCGCCGGCAGTGGAGCGGCCAATGCCGGGCAGCTCGGTAAGCTGCTCGACACTGCGCGGGAATTCGCCGCCATGTTGCTCGACGACGACCTTGGCGGCCTTTTGCAGGTTGCGTGCGCGGGTGTAGTAGCCAAGGCCCGTCCACAGGTGCAGCACTTCGTCCTCCGGTGCCTCGGCCAGGGCTTGCACCGTTGGCAGGGCCTGCATGAAGCGGTCGAAGTAATTGAGCACGGTGCTGACCTGGGTCTG  >  NC_002947/345191‑345482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.