New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3958449 =	52 (1.150)	3 (0.070)	3/236	NT	6.0%	coding (1980/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase
	?	NC_002947	3958492 =	44 (1.020)					coding (1937/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase

GCGGGCGGTTGCCCACGCTGCTTTCCATGCCACCGATCCAGAACGGGTAGCCTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCA  >  NC_002947/3958343‑3958638                                                                                                                                                      |                                                                                                                                                   gcgggcggTTGCCCACGCTGATTTCCATGCCACCGATCCAGAACGGGTAGCCTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGt                                                                                                                                                    <  2:1118189/150‑1 (MQ=255)       ggTTGCCCACGCTGCTTTCCATGCCACCGATCCAGAACGGGTAGCCTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGgtcgt                                                                                                                                              <  2:685380/150‑1 (MQ=255)        gTTGCCCACGCTGCTTTCCATGCCACCGATCCAGAACGGGTAGCCTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGgtcgtc                                                                                                                                             <  2:65368/150‑1 (MQ=255)         ttGCCCACGCTGCTTTCCATGCCACCGATCCAGAACGGGTAGCCTGGGTTTTTTTTTTTTTTTTTGTCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGtca                                                                                                                                            >  2:191316/1‑150 (MQ=255)           gCCCACGCTGCTTTCCATGCCACCGATCCAGAACGGGTAGCCTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGtcatc                                                                                                                                          <  2:349044/150‑1 (MQ=255)              cACGCTGCTTTCCATGCCACCGATCCAGAACGGGTAGCCTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCatcatc                                                                                                                                       >  1:974721/1‑150 (MQ=255)                 gctgctTTCCATGCCACCGATCCAGAACGGGTAGCCTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCatcatc                                                                                                                                       <  1:723070/147‑1 (MQ=255)                 gctgctTTCCATGCCACCGATCCAGAACGGGTAGCCTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCatcatc                                                                                                                                       >  2:723070/1‑147 (MQ=255)                 gctgctTTCCATGCCACCGATCCAGAACGGGTAGCCTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTc                                                                                                                                    <  1:930064/150‑1 (MQ=255)                  ctgctTTCCATGCCACCGATCCAGAACGGGTAGCCTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCg                                                                                                                                   >  1:445793/1‑150 (MQ=255)                   tgctTTCCATGCCACCGATCCAGAACGGGTAGCCTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGt                                                                                                                                  >  1:1072849/1‑150 (MQ=255)                   tgctTTCCATGCCACCGATCCAGAACGGGTAGCCTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGt                                                                                                                                  >  2:1066191/1‑150 (MQ=255)                      gcaaagtcgtggtcgtgcccaagctttccgaagcattggttgccgccaacgatgatgaccacgaagacgaggatgatgatgaccaCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGgtc                                                                                                                                                <  1:660869‑M1/48‑1 (MQ=255)                      gcaaagtcgtggtcgtgcccaagctttccgaagcattggttgccgccaacgatgatgaccacgaagacgaggatgatgatgaccaCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGgtc                                                                                                                                                >  2:660869‑M1/86‑133 (MQ=255)                       ttCCATGCCACCGATCCAGAACGGGTAGCCTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTc                                                                                                                              >  1:410153/1‑150 (MQ=255)                                aCCGATCCAGAACGGGTAGCCTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGtcatc                                                                                                                     >  2:517822/1‑150 (MQ=255)                                  cGATCCAGAACGGGTAGCCTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTcatcat                                                                                                                   >  1:293241/1‑150 (MQ=255)                                     tCCAGAACGGGTAGCCTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGt                                                                                                                >  1:954869/1‑150 (MQ=255)                                          aaCGGGTAGCCTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCGTCGTTggcg                                                                                                           >  1:623349/1‑150 (MQ=255)                                                  gcatGGGTTCTTCAGCCTAGGGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCaa                                                                                                   <  2:974721/147‑1 (MQ=255)                                                    cTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATg                                                                                                 >  1:259739/1‑150 (MQ=255)                                                     tGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGgtc                                                                                                                                                >  1:501990/1‑102 (MQ=255)                                                     tGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGgtc                                                                                                                                                <  2:501990/102‑1 (MQ=255)                                                       ggTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCtt                                                                                              <  2:954869/150‑1 (MQ=255)                                                         tttttCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCg                                                                                            <  2:445793/150‑1 (MQ=255)                                                           tttCAGCGTACCGTCGGCATTGCGGTTGGCTGCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGa                                                                                          <  1:907827/150‑1 (MQ=255)                                                                gCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCt                                                                                     >  2:628513/1‑150 (MQ=255)                                                                 ggTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATTATCGTTGGCGGCAACCa                                                                                                    >  1:1136934/2‑134 (MQ=255)                                                                 cGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATTATCGTTGGCGGCAACCa                                                                                                    <  2:1136934/134‑1 (MQ=255)                                                                  gTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTg                                                                                   <  2:735809/150‑1 (MQ=255)                                                                           gCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGcacgacc                                                                          >  1:353185/1‑150 (MQ=255)                                                                              ttGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGcacgaccacg                                                                       >  1:792812/1‑150 (MQ=255)                                                                                 cGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACt                                                                    >  1:365172/1‑150 (MQ=255)                                                                                 cGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACt                                                                    <  2:293241/150‑1 (MQ=255)                                                                                      ggCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGcc                                                               <  2:1072849/150‑1 (MQ=255)                                                                                        ccTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCgg                                                             <  2:570309/150‑1 (MQ=255)                                                                                        ccTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCgg                                                             >  1:964522/1‑150 (MQ=255)                                                                                             gTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCgg                                                             >  1:414162/1‑145 (MQ=255)                                                                                             gTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCgg                                                             <  2:414162/145‑1 (MQ=255)                                                                                                  gTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGgcgc                                                   >  2:106079/1‑150 (MQ=255)                                                                                                    cAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCa                                                 <  1:86308/150‑1 (MQ=255)                                                                                                      gaccacgccagtgaggcgcccgtgcgcaaggccgtgggctcgctggcgTGGTCATCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGc                                                                <  1:660869‑M2/85‑1 (MQ=255)                                                                                                      gaccacgccagtgaggcgcccgtgcgcaaggccgtgggctcgctggcgTGGTCATCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGc                                                                >  2:660869‑M2/49‑133 (MQ=255)                                                                                                      aCCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATg                                               >  1:456512/1‑150 (MQ=255)                                                                                                              cagtgaggcgcccgtgcgcaaggccgtgggctcgctggcgTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGcc                                       >  1:543363‑M2/41‑150 (MQ=255)                                                                                                               AGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCg                                      <  1:162385‑M1/150‑1 (MQ=255)                                                                                                                 cgAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCggg                                    >  1:823773/1‑150 (MQ=255)                                                                                                                         cGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCGTCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGCCCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCa                            <  2:623349/150‑1 (MQ=255)                                                                                                                             cTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGTCCTTGCCGGGCAACGGCACGAt                        <  1:599910/150‑1 (MQ=255)                                                                                                                                  gcACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATg                                                                                                 <  2:977118/72‑1 (MQ=255)                                                                                                                                  gcACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATg                                                                                                 >  1:977118/1‑72 (MQ=255)                                                                                                                                  gcACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTg                                                                 <  2:1056822/104‑1 (MQ=255)                                                                                                                                  gcACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTg                                                                 >  1:1056822/1‑104 (MQ=255)                                                                                                                                             tCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTa        >  1:191049/1‑150 (MQ=255)                                                                                                                                               aCTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTAcc      <  2:964522/150‑1 (MQ=255)                                                                                                                                                ctggcgTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCg     <  2:365172‑M2/144‑1 (MQ=255)                                                                                                                                                 tggcgTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGCTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCgg    <  2:823773‑M2/145‑1 (MQ=255)                                                                                                                                                   gcgTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCa  >  2:1114072‑M2/4‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GCGGGCGGTTGCCCACGCTGCTTTCCATGCCACCGATCCAGAACGGGTAGCCTGGGTTTTTCAGCGTACCGTCGGCATTGCGGTTGGCCTCGGTGCGGTCAACCAGCGCCAGCGAGCCCACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCA  >  NC_002947/3958343‑3958638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.