New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4079481	29 (0.640)	5 (0.140)	5/200	NT	15.5%	intergenic (‑241/+143)	sdaC/amaC	serine:H+ symport permease/D‑lysine aminotransferase
	?	NC_002947	= 4079550	31 (0.850)					intergenic (‑310/+74)	sdaC/amaC	serine:H+ symport permease/D‑lysine aminotransferase

GCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGG  >  NC_002947/4079403‑4079699                                                                                                                                                    |                                                                                                                                                      gCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTtc                                                                                                                                                     <  2:661624‑M2/150‑3 (MQ=255) gCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTtc                                                                                                                                                     <  1:619569‑M2/150‑3 (MQ=255)   aTTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTtcgc                                                                                                                                                   <  1:426671‑M2/150‑5 (MQ=255)          gtgtCGATGGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATGGGGCCGCAAAGCGGCCCCAGCAATTTCGGCGGCAAAGCTGCAATCCTAGGGGCGCTCCGCACGCTGTtcgccgcgcaa                                                                                                                                            >  2:312880‑M2/1‑139 (MQ=255)          gtgtCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTtcgcgacgcaa                                                                                                                                            <  2:1059025‑M2/150‑12 (MQ=255)            gtCGATCGGTGGAATGTAGCGGCTTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTtcgcgacgcaagg                                                                                                                                          >  2:474597‑M2/1‑137 (MQ=255)            gtCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTGGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTtcgcgacgcaagg                                                                                                                                          >  2:586950‑M2/1‑137 (MQ=255)               gATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTtcgcgacgcaaggccg                                                                                                                                       <  1:1079055‑M2/150‑17 (MQ=255)                aTCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTtcgcgacgcaaggccgc                                                                                                                                      <  2:413887‑M2/150‑18 (MQ=255)                    gTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTtcgcgacgcaaggccgctccc                                                                                                                                  <  2:1044119‑M2/150‑22 (MQ=255)                           gTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGt                                                                                                                           <  1:1059025/150‑1 (MQ=255)                           gTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGt                                                                                                                           <  1:1044119/150‑1 (MQ=255)                            tAGCGGCTTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTtcgcga                                                                                                                                                 >  2:170782‑M2/1‑121 (MQ=255)                            tAGCGGCTTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTtcgcga                                                                                                                                                 <  1:170782‑M2/127‑7 (MQ=255)                               cGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCaa                                                                                                                       <  1:517452/150‑1 (MQ=255)                                    tGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACcgcg                                                                                                                  <  2:1079055/150‑1 (MQ=255)                                          ccTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCcac                                                                                                            >  2:642838/1‑150 (MQ=255)                                           cTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGCTAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGGCGCTCCCACAAAGTCCAACCGCGCCCcaca                                                                                                           >  1:1140075/1‑150 (MQ=255)                                             gtgGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACagg                                                                                                         >  1:1097184/1‑150 (MQ=255)                                                     gcCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTtcgc                                                                                                                                                   <  1:110319‑M2/100‑5 (MQ=255)                                                     gcCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGCCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTtcgc                                                                                                                                                   >  2:110319‑M2/1‑96 (MQ=255)                                                       cTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCttt                                                                                                                                                       <  1:884000/94‑1 (MQ=255)                                                       cTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCttt                                                                                                                                                       >  2:884000/1‑94 (MQ=255)                                                           gggAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTg                                                                                           <  1:661624/150‑1 (MQ=255)                                                             gAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGTTCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGc                                                                                         <  2:885030/150‑1 (MQ=255)                                                                  gCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACACAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGtt                                                                                    >  1:258746/1‑150 (MQ=255)                                                                   ccTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGATGGGCCGCAGTTGGCCCGTTg                                                                                   <  2:426671/150‑1 (MQ=255)                                                                   ccTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTg                                                                                   >  1:624740/1‑150 (MQ=255)                                                                    cTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTtcgcgacgcaaggccgctcccacaggccgccccacag                                                                                                                  >  2:440415‑M2/1‑81 (MQ=255)                                                                    cTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTtcgcgacgcaaggccgctcccacaggccgccccacag                                                                                                                  <  1:440415‑M2/118‑38 (MQ=255)                                                                         gTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTtcgcgacgcaaggccgctcccacaggccgccccacaggcgcccaggccgctacattccaccgatcgacaccagc                                                                             <  2:71406‑M2/150‑75 (MQ=255)                                                                            gcgATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTtcgcgacgcaaggccgctcccacaggccgccccacaggcgcccaggccgctacattccaccgatcgacaccagcaat                                                                          <  1:861619‑M2/150‑78 (MQ=255)                                                                                      cGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACgg                                                                >  2:905158/1‑150 (MQ=255)                                                                                         aaaGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGtt                                                                                            <  1:165078/119‑1 (MQ=255)                                                                                         aaaGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGtt                                                                                            >  2:165078/1‑119 (MQ=255)                                                                                                  ccAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCtt                                                    <  2:624740/150‑1 (MQ=255)                                                                                                   cAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCATTTATGAGACGCAAATTTGGCGCTGCAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTc                                                   <  1:445042/150‑1 (MQ=255)                                                                                                    aGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTtcgcgacgcaaggccgctcccacaggccgccccacaggcgcccaggccgctacattccaccgatcgacaccagcaatgccttccgcttgtaaagacaagtg                                                  >  1:71406‑M2/1‑49 (MQ=255)                                                                                                    aGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCg                                                  <  1:843496/150‑1 (MQ=255)                                                                                                    aGCAATTTCAGCGGCAAAGCTCCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCg                                                  <  2:619569/150‑1 (MQ=255)                                                                                                       aaTTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCa                                               <  2:1026567/150‑1 (MQ=255)                                                                                                         tttCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGa                                                                               >  1:443274/1‑116 (MQ=255)                                                                                                         tttCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGa                                                                               <  2:443274/116‑1 (MQ=255)                                                                                                              gCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCg                                          <  2:305603/148‑1 (MQ=255)                                                                                                              gCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCg                                          >  1:305603/1‑148 (MQ=255)                                                                                                              gCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGtt                                        <  1:642838/150‑1 (MQ=255)                                                                                                                  cAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAg                                    <  1:413887/150‑1 (MQ=255)                                                                                                                   aaaGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAgg                                   >  1:682680/1‑150 (MQ=255)                                                                                                                   aaaGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAgg                                   >  2:325901/1‑150 (MQ=255)                                                                                                                           aaTCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCgg                           >  2:758100/1‑150 (MQ=255)                                                                                                                            aTCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCggg                          >  1:338123/1‑150 (MQ=255)                                                                                                                               gTAGGGGTGCAACGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACGGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGgcgc                       >  2:866567/1‑150 (MQ=255)                                                                                                                                tAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCa                      <  2:338123/150‑1 (MQ=255)                                                                                                                                            gCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGc          >  2:1116616/1‑150 (MQ=255)                                                                                                                                                  ttttCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCacacac    >  2:703443/1‑150 (MQ=255)                                                                                                                                                    ttCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACgg  <  2:613070/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      GCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCAGCAATTTCAGCGGCAAAGCTGCAATCGTAGGGGCGCTCCGCACCCTTTTCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGG  >  NC_002947/4079403‑4079699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.