New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4129658	43 (0.950)	5 (0.120)	4/234	NT	10.4%	coding (231/942 nt)	PP_3633	ArgC‑like N‑acetyl‑gamma‑glutamyl‑phosphate reductase
	?	NC_002947	= 4129681	46 (1.080)					coding (254/942 nt)	PP_3633	ArgC‑like N‑acetyl‑gamma‑glutamyl‑phosphate reductase

CGAGCGCAAGGACCCGCAACGCCGCTGCGAAGCGATCAACAGTGCCGACATCGCCCTGCTGTGCCTGCCCGACGACGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAGCAATCCCGGTTGCTATCCCACCGGCGCCATCGCGCTGCTGCACCCACTGGTCAAGGCCGGC  >  NC_002947/4129538‑4129826                                                                                                                                                |                                                                                                                                                  cGAGCGCAAGGACCCGCAACGCCGCTGCGAAGCGATCAACAGTGCCGACATCGCCCTGCTGTGCCTGCCCGACGACGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCAccgcac                                                                                                                                             <  2:1150166‑M2/150‑7 (MQ=255)  gAGCGCAAGGACCCGCAACGCCGCTGCGAAGCGATCAACAGTGCCGACATCGCCCTGCTGTGCCTGCCCGACGACGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCAccgcacc                                                                                                                                            <  1:35752‑M2/150‑8 (MQ=255)   aGCGCAAGGACCCGCAACGCCGCTGCGAAGCGATCAACCGTGCCGACATCGCCCTGCTGTGCCTGCCCGACGACGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGcacca                                                                                                                                           <  1:918092/150‑1 (MQ=255)        aaGGACCCGCAACGCCGCTGCGAAGCGATCAACAGTGCCGACATCGCCCTGCTGTGCCTGCCCGACGACGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGcaccacacca                                                                                                                                      >  2:459344/1‑150 (MQ=255)              cggCAACGCCGCTGCGAAGCGATCAACAGTGCCGACATCGCCCTGCTGTGCCTGCCCGACGACGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTgg                                                                                                                                >  2:911892/3‑150 (MQ=255)                                   aTCAACAGTGCCGACATCGCCCTGCTGTGCCCGGCCGGCGACCCCGCGCGGGAGGCCGTGGGCGCAATCCACAACCCCCAGGTGCGGGGGATCGACGCCCGCTCGGCGCCCCGCACCCCAACAGGCTGGGTGTATGGCCGGCCGGGGCtt                                                                                                           <  2:74092/150‑1 (MQ=255)                                     cAACAGTGCCGACATCGCCCTGCTGTGCCTGCCCGACGACCCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGa                                                                                                         <  1:436041/150‑1 (MQ=255)                                      aaCAGTGCCGACATCGCCCTGCTGTGCCTGCCCGACGACGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGAc                                                                                                        >  1:195972/1‑150 (MQ=255)                                             ccGACATCGCCCTGCTGTGCCTGCCCGACGACGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGc                                                                                                 >  1:683954/1‑150 (MQ=255)                                              cGACATCGCCCTGCTGTGCCTGCCCGACGACGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGa                                                                                                               >  1:992937/1‑135 (MQ=255)                                              cGACATCGCCCTGCTGTGCCTGCCCGACGACGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGa                                                                                                               <  2:992937/135‑1 (MQ=255)                                                  aTCGCCCTGCTGTGCCTGCCCGACGACGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGcc                                                                                            >  1:741327/1‑150 (MQ=255)                                                       ccTGCTGTGCCTGCCCGACGACGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTggg                                                                                                                               <  2:1150115/110‑1 (MQ=255)                                                       ccTGCTGTGCCTGCCCGACGACGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTggg                                                                                                                               >  1:1150115/1‑110 (MQ=255)                                                                 ctgccCGACGACGCCGCCCGCGAGGCCGTGGCCGCAAGCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTTACGAACAGCAAGCCGAGCGCATCGCGCaa                                                                             >  1:440782/1‑150 (MQ=255)                                                                  tgccCGACTACGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATAGACGCCAGCTCTGCCCATCGCACCACACCAGGCTTGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCaaa                                                                            <  1:749575/150‑1 (MQ=255)                                                                  tgccCGACGACGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCaaa                                                                            <  1:459344/150‑1 (MQ=255)                                                                     ccGACGACGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCACGCAAAGCa                                                                         <  1:229773/150‑1 (MQ=255)                                                                      cgacgaCGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAGCAGCAAGCCGAGCGCATCGCGCAAAGCAc                                                                        >  2:993380/1‑150 (MQ=255)                                                                      cgacgaCGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAg                                                                           <  2:213511/147‑1 (MQ=255)                                                                      cgacgaCGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAg                                                                           >  1:213511/1‑147 (MQ=255)                                                                      cgacgaCGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCAc                                                                        >  2:1160396/1‑150 (MQ=255)                                                                        acgacgCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCAcgc                                                                      <  2:35752/150‑1 (MQ=255)                                                                        acgacgCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCAcgc                                                                      <  1:911892/150‑1 (MQ=255)                                                                             gccggccgCGAGGCCGTGGCGGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTc                                                                 >  2:444086/1‑150 (MQ=255)                                                                             gccgccCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAg                                                                                              >  1:457918/1‑121 (MQ=255)                                                                             gccgccCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAg                                                                                              <  2:457918/121‑1 (MQ=255)                                                                              ccgcccgcGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCa                                                                >  2:457123/1‑150 (MQ=255)                                                                               cgcccgcGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAg                                                               >  1:453132/1‑150 (MQ=255)                                                                               cgcccgcGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAg                                                               >  2:726042/1‑150 (MQ=255)                                                                                    gcgAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTAt                                                                                                                          >  1:1013374/1‑86 (MQ=255)                                                                                    gcgAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTAt                                                                                                                          <  2:1013374/86‑1 (MQ=255)                                                                                      gAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAGCAATccc                                                        >  2:987038/1‑150 (MQ=255)                                                                                         gCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAGCAATCCCGGt                                                     <  1:803593/150‑1 (MQ=255)                                                                                             tGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAGCAATCCCGGTTGCt                                                 >  2:469936/1‑150 (MQ=255)                                                                                              ggCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAGCAATCCCGGTTGCTa                                                <  1:469936/150‑1 (MQ=255)                                                                                               gCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAGCAATCCCGGTTGCTAt                                               <  1:987038/150‑1 (MQ=255)                                                                                                 cGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCgt                                                                    >  1:639992/1‑127 (MQ=255)                                                                                                 cGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCgt                                                                    <  2:639992/127‑1 (MQ=255)                                                                                                              ccccAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAGCAATCCCGGTTGCTATCCCACCGGCGCCCTc                                >  2:450620/1‑150 (MQ=255)                                                                                                              ccccAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAGCAATCCCGGTTGCTATCCCACCGGCGCCATc                                >  2:584601/1‑150 (MQ=255)                                                                                                              ccccAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAGCAATCCCGGTTGCTATCCCACCGGCGCCATc                                >  1:47619/1‑150 (MQ=255)                                                                                                                ccAGGTGCGGGTGATCGACGCCAGCTCGGCGCAccgcacctgggggttgtggattgcggccacggcctcgcgggcggcgtcgtcgggcaggcacagcagggcgatgtcggcactgttgatcgcttcgcagcggcgttgcgggtccttgcg                              <  1:168616‑M2/150‑118 (MQ=255)                                                                                                                ccAGGTGCGGGTGATCGACGCCAGCTCGGCGCAccgcacctgggggttgtggattgcggccacggcctcgcgggcggcgtcgtcgggcaggcacagcagggcgatgtcggcactgttgatcgcttcgcagcggcgttgcgggtcc                                   <  2:1185339‑M2/145‑113 (MQ=255)                                                                                                                ccAGGTGCGGGTGATCGACGCCAGCTCGGCGCAccgcacctgggggttgtggattgcggccacggcctcgcgggcggcgtcgtcgggcaggcacagcagggcgatgtcggcactgttgatcgcttcgcagcggcgttgcgggtcc                                   >  1:1185339‑M2/1‑33 (MQ=255)                                                                                                                  aGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAGCAATCCCGGTTGCTATCCCACCGGCGCCATCgcgc                            <  1:1139041/150‑1 (MQ=255)                                                                                                                   ggTGCGGGTGATCGACGCCAGCTCGGCGCAccgcacctgggggttgtggattgcggccacggcctcgcgggcggcgtcgtcgggcaggcacagcagggcgatgtcggcactgttgatcgcttcgcagcggcgttgcgggtgcttgcgctc                           <  2:167183‑M2/150‑121 (MQ=255)                                                                                                                        gggTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAGCAATCCCGGTTGCTATCCCACCGGCGCCATCGCGCtgctgc                      <  1:782932/150‑1 (MQ=255)                                                                                                                                gACGCCAGCTCGGCGCAccgcacctgggggttgtggattgcggccacggcctcgcgggcggcgtcgtcgggcaggcacagcagggcgatgtcggcactgttgatcgcttcgcagcggcgttgcgggtccttgcgctcggcctcggggagg              >  2:168616‑M2/1‑17 (MQ=255)                                                                                                                                   gCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAGCAATCCCGGTTGCTATCCCACCGGCGCCATCGCGCTGCTGCACCCACTGGTc           <  1:457123/150‑1 (MQ=255)                                                                                                                                    ccAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAGCAATCCCGGTTGCTATCCCACCGGCGCCATCGCGCTGCTGCACCCACTGGTCa          >  1:926399/1‑150 (MQ=255)                                                                                                                                      aGCTCGGCGCACCGCAACACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAGCAATCCCGGTTGCTATCCCACCGGCGCCATCGCGCTGCTGCACCCACTGGTCAAg        <  1:187729/150‑1 (MQ=255)                                                                                                                                       gCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGATCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAGCAATCCCGGTCGCTACCCCACCGGTGCCATCGCGCTGCTGCACCCACTGGTCAAgg       <  2:741327/150‑1 (MQ=255)                                                                                                                                           ggCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGAATCGCGCAAAGCACGCGTGTCAGCAATCCCGGTTGCTATCCCACCGGCGCCATCGCGCTGCTGCACCCACTGGTCAAGGCCgg   <  1:927645/150‑1 (MQ=255)                                                                                                                                            gcgcACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAGCAATCCCGGTTGCTATCCCACCGGCGCCATCGCGCTGCTGCACCCACTGGTCAAGGCCGGc  <  2:683954/150‑1 (MQ=255)                                                                                                                                            gcgcACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAGCAATCCCGGTTGCTATCCCACCGGCGCCATCGCGCTGCTGCACCCACTGGTCAAGGCCGGc  >  1:525128/1‑150 (MQ=255)                                                                                                                                                |                                                                                                                                                  CGAGCGCAAGGACCCGCAACGCCGCTGCGAAGCGATCAACAGTGCCGACATCGCCCTGCTGTGCCTGCCCGACGACGCCGCCCGCGAGGCCGTGGCCGCAATCCACAACCCCCAGGTGCGGGTGATCGACGCCAGCTCGGCGCACCGCACCACACCAGGCTGGGTGTATGGCCTGCCGGAGCTTGACGAACAGCAAGCCGAGCGCATCGCGCAAAGCACGCGTGTCAGCAATCCCGGTTGCTATCCCACCGGCGCCATCGCGCTGCTGCACCCACTGGTCAAGGCCGGC  >  NC_002947/4129538‑4129826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.