New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4363036 =	28 (0.620)	4 (0.090)	4/242	NT	12.6%	coding (78/1011 nt)	adhP	alcohol dehydrogenase
	?	NC_002947	4363059 =	28 (0.640)					coding (101/1011 nt)	adhP	alcohol dehydrogenase

CTATCCCGACGATCACCCAAGCTCACATCGGATAGACACGGAGGCTCTCATGAAAGCTGCTGTCGTTGCACCAGGCCGTCGCGTGGACGTGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTGGGCCACGAAGGTATTGGCGTGGTTCAGGAAGTTGGCCCGGGCGTCACCTCGCTCAAGCCAGGCGACCGAGCCAGCGTT  >  NC_002947/4362910‑4363204                                                                                                                                                      |                                                                                                                                                  cTATCCCGACGATCACCCAAGCTCACATCGGATAGACACGGAGGCTCTCATGAAAGCTGCTGTCGTTGCACCAGGCCGTCGCGTGGACGTGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGtgctg                                                                                                                                                   >  1:772821/1‑150 (MQ=255)         acgaTCACCCAAGCTCACATCGGATAGACACGGAGGCTCTCATGAAAGCTGCTGTCGTTGCACCAGGCCGTCGCGTGGACGTGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGgtgtgt                                                                                                                                           <  2:772821/150‑1 (MQ=255)         acgaTCACCCAAGCTCACATCGGATAGACACGGAGGCTCTCATGAAAGCTGCTGTCGTTGCACCAGGCCGTCGCGTGGACGTGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGgtgtgt                                                                                                                                           <  2:350712/150‑1 (MQ=255)                          caTCGGATAGACACGGAGGCTCTCATGAAAGCTGCTGTCGTTGCACCAGGCCGTCGCGTGGACGTGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCAc                                                                                                                          <  2:241784/150‑1 (MQ=255)                                      acGGAGGCTCTCATGAAAGCTGCTGTCGTTGCACCAGGCCGTCGCGTGGACGTGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGc                                                                                                              <  1:577722/150‑1 (MQ=255)                                              tctcATGAAAGCTGCTGTCGTTGCACCAGGCCGTCGCGTGGACGTGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCacac                                                                                                                                    >  2:1121481/1‑120 (MQ=255)                                              tctcATGAAAGCTGCTGTCGTTGCACCAGGCCGTCGCGTGGACGTGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCacac                                                                                                                                    <  1:1121481/120‑1 (MQ=255)                                              tctcATGAAAGCTGCTGTCGTTGCACCAGGCCGTCGCGTGGACGTGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTgg                                                                                                      >  2:153458/1‑150 (MQ=255)                                              tctcATGAAAGCTGCTGTCGTTGCACCAGGCCGTCGCGTGGACGTGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTgg                                                                                                      <  1:514313/150‑1 (MQ=255)                                                     aaaGCTGCTGTCGTTGCACCAGGCCGTCGCGTGGACGTGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATg                                                                                                                >  2:311329/1‑133 (MQ=255)                                                     aaaGCTGCTGTCGTTGCACCAGGCCGTCGCGTGGACGTGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATg                                                                                                                <  1:311329/133‑1 (MQ=255)                                                           gctgTCGTTGCACCAGGCCGTCGCGTGGACGTGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCggg                                                                                         <  1:753806/150‑1 (MQ=255)                                                           gctgTCGTTGCACCAGGCCGTCGCGTGGACGTGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCggg                                                                                         <  1:727243/150‑1 (MQ=255)                                                                    cccggtcttgtcaccaaagtcgccatttttgacgtgcaggtcggtgtggcacacaccgcAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGc                                                                                                                                         >  2:259672‑M1/60‑93 (MQ=255)                                                                    cccggtcttgtcaccaaagtcgccatttttgacgtgcaggtcggtgtggcacacaccgcAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGc                                                                                                                                         <  1:259672‑M1/34‑1 (MQ=255)                                                                      aCCAGGCCGTCGCGTGGACGTGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTggg                                                                              >  2:154860/1‑150 (MQ=255)                                                                       ccAGGCCGTCGCGTGGACGTGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTGGGc                                                                             >  2:209256/1‑150 (MQ=255)                                                                              gTCGCGTGGACGTGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTGGGCCACGAAg                                                                      <  1:1026922/150‑1 (MQ=255)                                                                                          tGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTGGGCCACGAAGGTATTGGCGTgg                                                          <  1:873622/150‑1 (MQ=255)                                                                                            aTAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTGGGCCACGAAGGTATTGGCGTGGtt                                                        <  2:1049891/150‑1 (MQ=255)                                                                                              agagAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTGGGCCACGAAGGTATTGGCGTGGTTCa                                                      <  1:154860/150‑1 (MQ=255)                                                                                               gagaAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTGGGCCa                                                                           <  2:834194/128‑1 (MQ=255)                                                                                               gagaAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTGGGCCa                                                                           >  1:834194/1‑128 (MQ=255)                                                                                               gagaAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTGGGCCACGAAGGTATTGGCGTgg                                                          <  1:711413/145‑1 (MQ=255)                                                                                               gagaAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTGGGCCACGAAGGTATTGGCGTgg                                                          >  2:711413/1‑145 (MQ=255)                                                                                                  aaaaGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTgg                                                                               <  2:281328/121‑1 (MQ=255)                                                                                                  aaaaGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTgg                                                                               >  1:281328/1‑121 (MQ=255)                                                                                                                    gcacacaccgcagcactgcatcttcagcagcgctGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCggg                                                                                         >  2:259672‑M2/35‑93 (MQ=255)                                                                                                                    gcacacaccgcagcactgcatcttcagcagcgctGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCggg                                                                                         <  1:259672‑M2/59‑1 (MQ=255)                                                                                                                    gAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTGGGCCACGAAGGTATTGGCGTGGTTCAGGAAGTTGGCCCGGGCGTCAcc                                >  2:1049661/1‑150 (MQ=255)                                                                                                                        acGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTGGGCCACGAAGGTATTGGCGTGGTTCAGGAAGTTGGCCCGGGCGTCACCTCGc                            <  1:153458/150‑1 (MQ=255)                                                                                                                          gtggAACCGCTGCTGAAGATTCAGAGCTGCGGCGTGTGCCACACCGCCCTGCCCGTCAAAAATGGCGACTTTGGTGACAAAACGGGGGTAGAACTGGGCCACGAAGGTATTGGCGTCGTTGAGGAAGTTGGCCCGGGCGTCACCTCGGTc                          >  2:462112/4‑150 (MQ=255)                                                                                                                                 cactgcatcttcagcagcgctGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGc                                                                                                              <  1:584628‑M2/38‑1 (MQ=255)                                                                                                                                 cactgcatcttcagcagcgctGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGc                                                                                                              >  2:584628‑M2/22‑59 (MQ=255)                                                                                                                                             tGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTGGGCCACGAAGGTATTGGCGTGGTTCAGGAAGTTGGCCCGGGCGTCACCTCGCTCAAGCCAGGCGACCGAGCCa       >  2:1073135/1‑150 (MQ=255)                                                                                                                                                  tgctgcGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTGGGCCACGAAGGTATTGGCGTGGTTCAGGAAGTTGGCCCGGGCGTCACCTCGCTCAAGCCAGGCGACCGAGCCAGCGtt  >  2:1181041/1‑150 (MQ=255)                                                                                                                                                    ctGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTGGGCCACGAAGGTATTGGCGTGGTTCAGGAAGTTGGc                                            >  2:1070196‑M2/3‑106 (MQ=255)                                                                                                                                                    ctGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTGGGCCACGAAGGTATTGGCGTGGTTCAGGAAGTTGGc                                            <  1:1070196‑M2/104‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                  CTATCCCGACGATCACCCAAGCTCACATCGGATAGACACGGAGGCTCTCATGAAAGCTGCTGTCGTTGCACCAGGCCGTCGCGTGGACGTGATAGAGAAAAGCCTGCGCCCTCTCGAACACGGCGAAGCGCTGCTGAAGATGCAGTGCTGCGGTGTGTGCCACACCGACCTGCACGTCAAAAATGGCGACTTTGGTGACAAGACCGGGGTAGTACTGGGCCACGAAGGTATTGGCGTGGTTCAGGAAGTTGGCCCGGGCGTCACCTCGCTCAAGCCAGGCGACCGAGCCAGCGTT  >  NC_002947/4362910‑4363204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.