New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5795612 =	59 (1.310)	3 (0.070)	3/242	NT	5.5%	coding (2344/4446 nt)	gltB	L‑glutamate synthase subunit alpha
	?	NC_002947	5795659 =	46 (1.040)					coding (2297/4446 nt)	gltB	L‑glutamate synthase subunit alpha

TTGAACTTGGCGTAGTCGCCCTGCTGCACAGCCGCTTGCAGGGTGTTGACCACGTCCGGGTTGTAGGCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCGGCCAGGCCAATGGCTTCGAACAGCTGTGCACCGCGGTACGAGGCGATGGTGGAGATAC  >  NC_002947/5795512‑5795806                                                                                                                                                    |                                                                                                                                                    ttGAACTTGGCGTAGTCGCCCTGCTGCACAGCCGCTTGCAGAGTGTTGACCACGTCCGGGTTGTAGGCATGGTATTCGCCACCGTGGACGAACTGCAGCTGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCcagc                                                                                                                                                   >  2:1041344/1‑150 (MQ=255)  tggcctggccgaggaagtggtcggcctgagcttcaagggcgtgtccagccgcatcaagggtgcgcgcttcgaagacctggaaaacgaccagaagctgctGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCcagca                                                                                                                                                  >  2:775245‑M1/100‑150 (MQ=255)   ggcctggccgaggaagtggtcggcctgagcttcaagggcgtgtccagccgcatcaagggtgcgcgcttcgaagacctggaaaacgaccagaagctgctGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCcagcag                                                                                                                                                 >  2:40083‑M1/99‑150 (MQ=255)            gTAGTCGCCCTGCTGCACAGCCGCTTGCAGGGTGTTGACCACGTCCGGGTTGTAGGCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTc                                                                                                                                        >  2:935420/1‑150 (MQ=255)                tCGCCCTGCTGCACAGCCGCTTGCAGGGTGTTGACCACGTCCGGGTTGTAGGCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGttt                                                                                                                                    <  1:4994/150‑1 (MQ=255)                  gCCCTGCTGCACAGCCGCTTGCAGGGTGTTGACCACGTCCGGGTTGTAGGCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTc                                                                                                                                  >  2:348209/1‑150 (MQ=255)                   cccTGCTGCACAGCCGCTTGCAGGGTGTTGACCACGTCCGGGTTGTAGGCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTcc                                                                                                                                 >  1:208257/1‑150 (MQ=255)                       gctgcACAGCCGCTTGCAGGGTGTTGACCACGTCCGGGTTGTAGGCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGt                                                                                                                             >  1:478189/1‑150 (MQ=255)                           cacaGCCGCTTGCAGGGTGTTGACCACGTCCGGGTTGTAGGCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTc                                                                                                                         >  1:748619/1‑150 (MQ=255)                                  gCTTGCAGGGTGTTGACCACGTCCGGGTTGTAGGCGTGGTATTAGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAgcgc                                                                                                                  >  2:875390/1‑150 (MQ=255)                                          ggTGTTGACCACGTCCGGGTTGTAGGCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCtt                                                                                                          >  2:37353/1‑150 (MQ=255)                                              ttGACCACGTCCGGGTTGTAGGCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATg                                                                                                      <  1:37353/150‑1 (MQ=255)                                                          gggTTGTAGGCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACg                                                                                          >  1:1058069/1‑150 (MQ=255)                                                           gggtGTAGGCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTc                                                                                                                                             >  1:1204381/4‑98 (MQ=255)                                                           ggTTGTAGGCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTc                                                                                                                                             <  2:1204381/98‑1 (MQ=255)                                                                  ggCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCca                                                                                                                                                     >  2:1145352/1‑83 (MQ=255)                                                                  ggCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCca                                                                                                                                                     <  1:1145352/83‑1 (MQ=255)                                                                   gCGTGGTATTCGCCACCGTGGACGAACTTCATCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTc                                                                                                                                        >  1:31112/1‑95 (MQ=255)                                                                   gCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTc                                                                                                                                        <  2:31112/95‑1 (MQ=255)                                                                   gCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGaa                                                                                  <  1:1046111/149‑1 (MQ=255)                                                                   gCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGaa                                                                                  >  2:1046111/1‑149 (MQ=255)                                                                   gCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAg                                                                                 <  2:110317/150‑1 (MQ=255)                                                                   gCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGAGCACCCTTGATACGGCTGGGCACGCCCTTGAAg                                                                                 >  2:975235/1‑150 (MQ=255)                                                                    cGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCa                                                                                                                                >  1:826430/1‑102 (MQ=255)                                                                    cGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCa                                                                                                                                <  2:826430/102‑1 (MQ=255)                                                                       ggTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCATTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCa                                                                             <  2:1197003/150‑1 (MQ=255)                                                                             cGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCGGGTCGTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGa                                                                       <  2:813826/150‑1 (MQ=255)                                                                              gCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGAc                                                                      <  2:748619/150‑1 (MQ=255)                                                                              gCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGAc                                                                      >  1:1044886/1‑150 (MQ=255)                                                                               ccACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTc                                                                                                                                  >  1:706821/1‑89 (MQ=255)                                                                               ccACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTc                                                                                                                                  <  2:706821/89‑1 (MQ=255)                                                                                cACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGc                                                                                                  >  2:1136883/1‑120 (MQ=255)                                                                                cACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGc                                                                                                  <  1:1136883/120‑1 (MQ=255)                                                                                   cGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACtt                                                                 >  2:77031/1‑150 (MQ=255)                                                                                     tGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTc                                                                              >  2:610420/1‑135 (MQ=255)                                                                                     tGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTc                                                                              <  1:610420/135‑1 (MQ=255)                                                                                              ttCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCggccagg                                                      >  2:1114211/1‑150 (MQ=255)                                                                                              ttCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCggccagg                                                      <  2:1044886/150‑1 (MQ=255)                                                                                                ctgctggcggccgaagcctggagcgcgcgcaagccgatccagcaaggtggccAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCggccaggcc                                                    >  2:40083‑M2/53‑150 (MQ=255)                                                                                                cagcagGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGa                                                                                   <  1:546663/119‑1 (MQ=255)                                                                                                cagcagGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGa                                                                                   >  2:546663/1‑119 (MQ=255)                                                                                                 tgctggcggccgaagcctggagcgcgcgcaagccgatccagcaaggtggccAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCggccaggcca                                                   >  2:775245‑M2/52‑150 (MQ=255)                                                                                                     ggcggccgaagcctggagcgcgcgcaagccgatccagcaaggtggccAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCGGCCAGGCCAATgg                                               <  1:775245‑M2/103‑1 (MQ=255)                                                                                                      GCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGt                                                                                                                             >  1:1077069‑M1/1‑71 (MQ=255)                                                                                                      GCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGt                                                                                                                             <  2:1077069‑M1/71‑1 (MQ=255)                                                                                                        cACCTTGCTGGATCGGCTTGCGCGCGATACAGGATTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCGGCCAGGCCAATGGCtt                                            <  2:800877/150‑1 (MQ=255)                                                                                                                 ggATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCGGCCAGGCCAATGGCTTCGAACAGCt                                   >  1:130779/1‑150 (MQ=255)                                                                                                                  gATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCGGCCAGGCCAATGGCTTCGAACAGCtg                                  >  2:992830/1‑150 (MQ=255)                                                                                                                   aTCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCGGCCAGGCCAATGGCTTCGAACAGCtgt                                 <  1:348209/150‑1 (MQ=255)                                                                                                                     cGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCGGCCAGGCCAATGGCTTCGAACAGCTGTGc                               <  1:77031/150‑1 (MQ=255)                                                                                                                       gCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCGGCCAGGCCAATGGCTTCGAACAGCTGTGCAc                             <  2:478189/150‑1 (MQ=255)                                                                                                                             gcgcgcTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCGGCCAGGCCAATGGCTTCGAACAGCTGTGCACCGCGGt                       >  2:1098668/1‑150 (MQ=255)                                                                                                                                 gcTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCGGCCAGGCCAATGGCTTCGAACAGCTGTGCACCGCGGTACGa                   <  2:878528/150‑1 (MQ=255)                                                                                                                                  cTCCAGGCTGCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCGGAGCACTTCCTCGGCCAGGCCAATGGCTTCGAACAGCTGTGCACCGCGGTACGAg                  <  2:59676/150‑1 (MQ=255)                                                                                                                                        gCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCGGCCAGGCCAATGGCTTCGAACAGCTGTGCACCGCGGTACGAGGCGAtg            <  1:1098668/150‑1 (MQ=255)                                                                                                                                          ttCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCGGCCAGGCCAATGGCTTCGAACAGCTGTGCACCGCGGTACGAGGCGAtggt          <  1:992830/150‑1 (MQ=255)                                                                                                                                             ggCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGACGCGCGCACCCTTGATGCGGCTGGACCCGCCCTTGAAGCTCCGGCCGACCACTTCCTCGGCCAGGCCAATGGCTTCGAACATCTGTGCACCGCGGTACGAGGCGATGGTGga       <  2:647855/150‑1 (MQ=255)                                                                                                                                             ggCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCGGCCAGGCCAATGGCTTCGAACAGCTGTGCACCGCGGTACGAGGCGATGGTGga       <  2:208257/150‑1 (MQ=255)                                                                                                                                                  ccAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCCCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCGGCCCGGCCAATGGCTTCGATCACCTGTGCACCTCGGTACGTGGCGATGTTGGTGATAc  >  2:263532‑M2/3‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TTGAACTTGGCGTAGTCGCCCTGCTGCACAGCCGCTTGCAGGGTGTTGACCACGTCCGGGTTGTAGGCGTGGTATTCGCCACCGTGGACGAACTTCAGCAGGCCACCTTGCTGGATCGGCTTGCGCGCGCTCCAGGCTTCGGCCGCCAGCAGCTTCTGGTCGTTTTCCAGGTCTTCGAAGCGCGCACCCTTGATGCGGCTGGACACGCCCTTGAAGCTCAGGCCGACCACTTCCTCGGCCAGGCCAATGGCTTCGAACAGCTGTGCACCGCGGTACGAGGCGATGGTGGAGATAC  >  NC_002947/5795512‑5795806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.