New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3952497 =	16 (0.990)	3 (0.200)	3/242	NT	18.1%	coding (97/657 nt)	PP_3488	Sco1/SenC family protein
	?	NC_002947	3952532 =	12 (0.780)					coding (62/657 nt)	PP_3488	Sco1/SenC family protein

GCGTTCTGCCGGCTGCTGCAACCAACGCTTCCCAGACTGACGTGAGGAATGTGCGATGAACGCCAAGCCTGCTTGCACACTGTTGGCCCTGAGCCTGGCATTCGCCAGCCACCTGGCCATGGCCCACGCCGGTCACGCGCATGACGGCCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3952648‑3952497 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccatgGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCA  >  NC_002947/3952532‑3952642                                                                                                                                                                                                                                                                         GCGTTCTGCCGGCTGCTGCAACCAACGCTTCCCAGACTGACGTGAGGAATGTGCGATGAACGCCAAGCCTGCTTGCACACTGTTGGCCCTGAGCCTGGCATTCGCCAGCCACCTGGCCATGGCCCACGCCGGTCACGCGCATGACGGCCA                                                                                                                   <  1:72583/150‑1                  GCAACCAACGCTTCCCAGACTGACGTGAGGAATGTGCGATGAACGCCAAGCCTGCTTGCACACTGTTGGCCCTGAGCCTGGCATTCGCCAGCCACCTGGCCATGGCCCACGCCGGTCACGCGCATGACGGC                                                                                                                     <  1:312886/131‑1                  GCAACCAACGCTTCCCAGACTGACGTGAGGAATGTGCGATGAACGCCAAGCCTGCTTGCACACTGTTGGCCCTGAGCCTGGCATTCGCCAGCCACCTGGCCATGGCCCACGCCGGTCACGCGCATGACGGC                                                                                                                     >  2:312886/1‑131                                                                                                                  TGGCCATGGCCCACGCCGGTCACGCGCATGACGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCA  >  2:118741/1‑150                                                                                                                          GCCCACGCCGGTCACGCGCATGACGGCCATGGCCAGGTGGCTGGCGAATGCC                                                                                            >  1:302153/1‑52                                                                                                                          GCCCACGCCGGTCACGCGCATGACGGCCATGGCCAGGTGGCTGGCGAATGCC                                                                                            <  2:302153/52‑1                                                                                                                                                                                                                                                                         GCGTTCTGCCGGCTGCTGCAACCAACGCTTCCCAGACTGACGTGAGGAATGTGCGATGAACGCCAAGCCTGCTTGCACACTGTTGGCCCTGAGCCTGGCATTCGCCAGCCACCTGGCCATGGCCCACGCCGGTCACGCGCATGACGGCCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3952648‑3952497 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccatgGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCA  >  NC_002947/3952532‑3952642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.