New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3952497 = | 16 (0.990) | 3 (0.200) | 3/242 | NT | 18.1% | coding (97/657 nt) | PP_3488 | Sco1/SenC family protein |
? | NC_002947 | 3952532 = | 12 (0.780) | coding (62/657 nt) | PP_3488 | Sco1/SenC family protein |
CACCCACCAGGTCTTTCTCCAGGCGTACCGGCATGCCGTCCTGGTTCAGCAGCGACACATCGGCAAAACGCACACTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCAGAACGC > NC_002947/3952386‑3952648 | tgccggctgctgcaaccaacgcttcccagactgacgtgaggaatgtgcgatgaacgccaagcctgcttgcacactgttggccctgagcctggcattcgccagccacctggcCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCa > 2:118741‑M1/112‑150 (MQ=255) caccaGGTCTTTCTCCAGGCGTACCGGCATGCCGTCCTGGTTCAGCAGCGACACATCGGCAAAACGCACACTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGtg > 2:151367/1‑150 (MQ=255) tttCTGCAGGCGTACCGGCATGCTGTCTTGGTTCAGCAGCGACACATCGGCAAAACGCACACTGGTGTTTTCCTGGTGCGCAGCGGGGGGCTGCCCTGCATGGCCGGCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGaa > 2:213680/1‑150 (MQ=255) tGGTTCAGCAGCGACACATCGGCAAAACGCACACTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCaa < 1:338276/150‑1 (MQ=255) cGACACATCGGCAAAACGCACACTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGc < 2:406221/150‑1 (MQ=255) aTCGGCAAAACGCACACTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTcct > 2:223820/1‑148 (MQ=255) acacTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCa < 1:151367/150‑1 (MQ=255) tGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTg < 1:216572/125‑1 (MQ=255) tGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTg > 2:216572/1‑125 (MQ=255) ttttCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCt > 2:127604/1‑150 (MQ=255) cgGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTgca < 2:109946/150‑1 (MQ=255) gggggCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTgcag < 1:19956/150‑1 (MQ=255) tggccatggcccacgccggtcacgcgcatgacggccatgGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCa > 2:118741‑M2/40‑150 (MQ=255) gCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCAGaa < 1:213680/150‑1 (MQ=255) TGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCAGAAcgc < 1:72583‑M1/150‑1 (MQ=255) gcccacgccggtcacgcgcatgacggccatgGCCAGGTGGCTGGCGAATGcc > 1:302153‑M2/32‑52 (MQ=255) gcccacgccggtcacgcgcatgacggccatgGCCAGGTGGCTGGCGAATGcc < 2:302153‑M2/21‑1 (MQ=255) GCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTgc < 1:312886‑M1/131‑1 (MQ=255) GCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTgc > 2:312886‑M1/1‑131 (MQ=255) | CACCCACCAGGTCTTTCTCCAGGCGTACCGGCATGCCGTCCTGGTTCAGCAGCGACACATCGGCAAAACGCACACTGGTCTTTTCCTGGTGCGCCGCCGGGGGCTGCCCGGCATGGCCGTCATGCGCGTGACCGGCGTGGGCCATGGCCAGGTGGCTGGCGAATGCCAGGCTCAGGGCCAACAGTGTGCAAGCAGGCTTGGCGTTCATCGCACATTCCTCACGTCAGTCTGGGAAGCGTTGGTTGCAGCAGCCGGCAGAACGC > NC_002947/3952386‑3952648 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |