New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4248757	25 (1.540)	3 (0.190)	3/246	NT	11.1%	coding (1314/2118 nt)	PP_3724	acyl‑CoA synthetase
	?	NC_002947	= 4248799	24 (1.540)					coding (1272/2118 nt)	PP_3724	acyl‑CoA synthetase

TTGCCATTCGTCCAACAGTCGGCTTTCGCCCGTGAGGGCCTGCGGGCACAGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4248607‑4248757 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcCAGTGCGCGTGAGCGCCTGCATGCGCGGGGCATCGCTGCCCTGCAGGGTGTGGAAGACG  <  NC_002947/4248799‑4248741                                                                                                                                                                                                                    TTGTCATTCGTCCAACAGTCGGCTTTCGCCCGTGAGGGCCTGCGGGCACCGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGAGACAACAGGCGGACCGGCCGTTTTCCACACCCTc                                                              >  2:96095/1‑149                                                accGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCCAGTGCGCGTGAGCGCCTGCATGCGCGGGGCATCGCTGCCCTGCAG               <  1:96095/147‑1                                                                                         TGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCCAGTGCGCGTGAGCGCCTGCATGCGCGGGGCATCGCTGCCCTGCAGGGTGTG         <  1:169345/115‑1                                                                                         TGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCCAGTGCGCGTGAGCGCCTGCATGCGCGGGGCATCGCTGCCCTGCAGGGTGTG         >  2:169345/1‑115                                                                                                                                                     TGCCAGTGCGCGTGAGCGCCTGCATGCGCGGGGCATCGCTGCCCTGCAGGGTGTGGAAGACG  >  1:396310/1‑62                                                                                                                                                     TGCCAGTGCGCGTGAGCGCCTGCATGCGCGGGGCATCGCTGCCCTGCAGGGTGTGGAAGACG  <  2:396310/62‑1                                                                                                                                                                                                                    TTGCCATTCGTCCAACAGTCGGCTTTCGCCCGTGAGGGCCTGCGGGCACAGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4248607‑4248757 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcCAGTGCGCGTGAGCGCCTGCATGCGCGGGGCATCGCTGCCCTGCAGGGTGTGGAAGACG  <  NC_002947/4248799‑4248741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.