New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4248757 | 25 (1.540) | 3 (0.190) | 3/246 | NT | 11.1% | coding (1314/2118 nt) | PP_3724 | acyl‑CoA synthetase |
? | NC_002947 | = 4248799 | 24 (1.540) | coding (1272/2118 nt) | PP_3724 | acyl‑CoA synthetase |
CCATTCGTCCAACAGTCGGCTTTCGCCCGTGAGGGCCTGCGGGCACAGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGCCCCAGCAGCAGGTCGCATTCCTTGCGTTCG > NC_002947/4248610‑4248904 | ccATTCGGCCAACAGTCGGCTTTCGCCCGTGAGGGCCTGCGGGCACAGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGGTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAg > 1:288106/1‑150 (MQ=255) aGTCGGCTTTCGCCCGTGAGGGCCTGCGGGCACAGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGccc > 2:199197/1‑150 (MQ=255) ggCTTTCGCCCGTGAGGGCCTGCGGGCACAGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCcgcg > 1:6451/1‑150 (MQ=255) gCCCGTGAGGGCCTGCGGGCACAGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAg < 1:199197/150‑1 (MQ=255) ccGTGAGGGCCTGCGGGCACAGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGgc > 2:303758/1‑150 (MQ=255) accgcggTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCcagtgcgcgtgagcgcctgcatgcgcggggcatcgctgccctgcag < 1:96095‑M1/147‑47 (MQ=255) aGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTggcaggc > 1:107928/1‑150 (MQ=255) ccGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTc > 2:353268/1‑150 (MQ=255) gCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCg < 2:6451/150‑1 (MQ=255) ccTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAgg > 1:172343/1‑150 (MQ=255) tGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGAGACGATGCGCGCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCTATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAgcag > 2:121119/1‑147 (MQ=255) aCCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGa < 1:207333/150‑1 (MQ=255) tGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCcagtgcgcgtgagcgcctgcatgcgcggggcatcgctgccctgcagggtgtg < 1:169345‑M1/115‑53 (MQ=255) tGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCcagtgcgcgtgagcgcctgcatgcgcggggcatcgctgccctgcagggtgtg > 2:169345‑M1/1‑63 (MQ=255) tCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGc < 1:369235/150‑1 (MQ=255) ggTAAGCGAGGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCaa < 1:353268/150‑1 (MQ=255) gacgaTGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATc > 2:342396/1‑150 (MQ=255) gaTGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCa < 2:107928/150‑1 (MQ=255) aTGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGAGCTTGCCGTGGCGTTCAACGGCATCGCAg < 1:303758/150‑1 (MQ=255) gcCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACa > 1:122604/1‑150 (MQ=255) gccaggccgTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGccc > 2:383/1‑143 (MQ=255) gccaggccgTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGccc < 1:383/143‑1 (MQ=255) ccaggccgTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGCCCcagcagca > 2:231310/1‑150 (MQ=255) cgTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGgca < 2:396310‑M2/62‑4 (MQ=255) cgTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGgca > 1:396310‑M2/1‑59 (MQ=255) cgTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAg > 1:28370/1‑133 (MQ=255) cgTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAg < 2:28370/133‑1 (MQ=255) cgTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGCCCcagcagcag < 2:302816/145‑1 (MQ=255) cgTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGCCCcagcagcag > 1:302816/1‑145 (MQ=255) cacaCCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGgcagggtgtggaagacggcctggcggcctgggggcgcatcgtcgcttaccaaaagaaccgcca < 1:169345‑M2/115‑64 (MQ=255) cacaCCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGgcagggtgtggaagacggcctggcggcctgggggcgcatcgtcgcttaccaaaagaaccgcca > 2:169345‑M2/1‑52 (MQ=255) cacaCCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGCCCCAGCAGCAGGTCGCATTCCtt < 1:231310/150‑1 (MQ=255) cacCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGCCCCAGCAGCAGGTCGCATTCCTTGc < 2:421984/150‑1 (MQ=255) cTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGgcagggtgtggaagacggcctggcggcctgggggcgcatcgtcgcttaccaaaagaaccgccagcggttgatggaccagggcgaggctgtgcgggtaccgcggt < 1:96095‑M2/150‑105 (MQ=255) tGCcagtgcgcgtgagcgcctgcatgcgcggggcatcgctgccctgcagggtgtggaagacg > 1:396310‑M1/1‑3 (MQ=255) tGCcagtgcgcgtgagcgcctgcatgcgcggggcatcgctgccctgcagggtgtggaagacg < 2:396310‑M1/62‑60 (MQ=255) tGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGTACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGCCCCAGCAGCAGGTCGCATTCCTTGCGTTCg > 1:425620/1‑150 (MQ=255) | CCATTCGTCCAACAGTCGGCTTTCGCCCGTGAGGGCCTGCGGGCACAGCGGTACCCGCACAGCCTCGCCCTGGTCCATCAACCGCTGGCGGTTCTTTTGGTAAGCGACGATGCGCCCCCAGGCCGCCAGGCCGTCTTCCACACCCTGCAGGGCAGCGATGCCCCGCGCATGCAGGCGCTCACGCGCACTGGCAGGCAACAGTTCCGGGAAAGCCGAGGTGACGAAGCCGATCTTGCCGTGGCGTTCAACGGCATCGCAGTACAGCCCCAGCAGCAGGTCGCATTCCTTGCGTTCG > NC_002947/4248610‑4248904 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |